BAC Information

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BAC

Clone NameMSMg01-265F08
Chromosome2 (Build37)
Map Location 118,148,955 - 118,149,240
singlet/doubletsinglet
Overlap geneGpr176
Upstream geneRasgrp1, Thbs1, Fsip1, 1700054M17Rik
Downstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F08.T7 (MSMg01no265_f08.b1)MSMg01-265F08.TJ (MSMg01no265_f08.g1)
ACCAG406627AG406628
length845777
length of high quality
(start - end)
186 (180 - 365)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no265_f08.b1 PHD_FILE: MSMg01no265_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:47 2005CHROMAT_FILE: MSMg01no265_f08.g1 PHD_FILE: MSMg01no265_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTGATATAAAAATGATTTTTCCCCCTCTCCCTAAAAATATTNCCCC
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTGTGTGCTAAAGTGTGCCTGCATCCCATCCCTGCTACAGCT
GGATTCATCACTAACATCTTTTCCCCTAACCCAAACAGCAACCGCAGTTG
TCACCCGTTCCCTGGCAGTTCTACTTCCTAGCCATTCCCTGTGTCAAACT
GCACATCCATCAGGGTTCTTAGAAGCAAACAATAAAAACAGCCAAACTGA
TGTTGGCTTCTTTAAGCAGAAACAGAATTAAAATAATGCCAGATATTTTC
ATGTCATTTTTGATAAGGCTATATAATGGTGCTGGTAAACCACCAGGAGC
AAATAGGAGTCTACTTTTTTTTACTCACCCAAACCTGTGGCCATGATATC
TGCTGAGCTGCATGCACCCCCATGGCAGCACCTGAAAAAAAAATACCACC
GCTGGGACCACCATCTCCCACACCACCATGGTGTAACACTGGGTGAATTG
TCCATTCTTACTGCCACATCGTTTAGATTTGGGTATACATACCCGATAGT
CTACATCCAGCATATGCCCTTATCAAAGTCAGCCTAGATAAAGCAATTAG
ATAACCCAGAAAACCTTGGTAGAAAAGTAACGCTGTGTAACCCTATATAA
AAATCACTAAGCGCTGTAATCCTCCCAATCCCAACCCAGGTAAAATACTT
GAGCACACAAATGTCCTTATTCCCTTTTTCCAAAAAAACTGCTTTGAATT
CCTTCATGCACACCATCACTTACCTTCAAAATAATAATAAAAATT
ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGAATGGATACTTTTGAGTGC
CTGCTATCTGCTGGGTATTGTCTGATACATTGTAGATATAGTGATAAACC
AAGGCCCTAATTTCGCCTGCTGCCTTTCCAGTGCGCATGATAGTCATCAC
ATTCATTTTAAAGATCTTATAATTAAAGGAACCTGATACAGTGTAATGAA
CTCACCCCCAAACCAGTGAAATACTTGATCCTTGGGAGATATCACCTAGG
GTTAGAGAGGCCATCCCTAGAATACTTTCCTATACCTAGTGGAGAGGTTA
AGGGAGCTTTTATTGTTTTTTAAAACACCACCCCGCCCTCCCCCCCCGGG
GGGGGTGGTGGGATGTACCCACCAGACAAAAACAAGAAACTTTGTGTCCT
TTCATCTTCTACTGAGGTGTTGAAAGCTGAGTTCTGTTGGGGGGGGGGAT
TAGACCCCAGGTACAAATAAAGACATGATGGGTTCTTTTGTCCCCTCTGT
TCATACTAGTTTCACACTCTAGTGTACTTGTTGTGTAATGTCTAACTATA
AACTATTTCTTATTGACATATTTCCTCAAGGTCTCTTTATTCAATTATCT
TTTATTTTTACATTCATGGTAACACTGACTTTTCGTTTCATTATCTTCTA
TCCAAGAAACCCTTTCATTCCATCTTTTTAAATCCAACATATCGTCTCTA
TCCTATTCCATATATTTATTATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f08.g1 MSMg01no265_f08.g1 CHROMAT_FILE:
MSMg01no265_f08.g1 PHD_FILE: MSMg01no265_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:47 2005
         (286 letters)



>mm_chr2_118148676_118149361
          Length = 686

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaatggatacttttgagtgcctgctatctgctgggtattgtctgatacattgtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaggaatggatacttttgagtgcctgctatctgctgggtattgtctgatacattgtaga 506

                                                                       
Query: 61  tatagtgataaaccaaggccctaatttcgcctgctgcctttccagtgcgcatgatagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 tatagtgataaaccaaggccctaatttcgcctgctgcctttccagtgcgcatgatagtcg 446

                                                                       
Query: 121 tcacattcattttaaagatcttataattaaaggaacctgatacagtgtaatgaactcacc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tcacattcattttaaagatcttataattaaaggaacctgatacagtataatgaactcacc 386

                                                                       
Query: 181 cccaaaccagtgaaatacttgatccttgggagatatcacctagggttagagaggccatcc 240
           ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct: 385 cccaagccagtgaaatacttgatcctcgggagaaatcacctagggttagagaggccgtcc 326

                                                         
Query: 241 ctagaatactttcctatacctagtggagaggttaagggagctttta 286
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagaagactttcctatacctagtggagaggttaagggagctttta 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)