BAC Information

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BAC

Clone NameMSMg01-265G03
Chromosome2 (Build37)
Map Location 100,172,747 - 100,173,034
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G03.T7 (MSMg01no265_g03.b1)MSMg01-265G03.TJ (MSMg01no265_g03.g1)
ACCAG406660AG406661
length808771
length of high quality
(start - end)
229 (131 - 359)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_g03.b1 PHD_FILE: MSMg01no265_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:51 2005CHROMAT_FILE: MSMg01no265_g03.g1 PHD_FILE: MSMg01no265_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAGGATCCGCGG
AATTCTCTGTTATATCTGTAATCAATTTGGGCTACTGGGGNTATTTGCAT
TGCTGGTGTTTAACTTTTTGAGCCCTTTATAAAAGTTTTGGATATTAGCC
TCTGTCAGATGTAAGGTTGTTGAAGATACTTTCCCAATATTTTGTCTGTG
GTTTTATCATTGGACTTATAGAAGCTTTTCAGTTTCATGAGGTTCCATTT
TTCAATTGCTGATCTTAGAACCTTTGCCATAGGTATTCTATTCATAAAGT
TGTCTCCTGTACTGAGTGCTTTTTTTTTCCCCACTTTGTGTTCTATCAAA
TTTAGGGTCTTTTTTTTTTTTTTACCCCCCCCCTCCCCTTGGACTTCAAT
ATTTTGAAGTGTGTCCCCCCCCCCCTATATAAAAAAAAAAGAAAATGAAG
ACGTCCAGTTAGATAGGCACCATTTGTTGAAGATGCTTTCTTTTCTTCCA
TTGTATGGTTGTAGGTTTAGATTTTTCTAAATCTATTTTAATTATGGGTT
GTAAAACGTCTATCTTCTCTTTTTACCCATCCGTGTTCACCACTTTTTTT
TATATACTTGTTTAAAAGAATATATGTTGTTGTTGTACCTGATTTTACAA
CTTATTGTTTTGATAAGTCTCCTTCTTTTTTGTAAATTATTTTGCGCAAT
GCATTTATCTTATTATTTATTATAACAATTATATGTCTACATATTCTCTC
TTTTTGTTCTATCATACATTATTAGTTTTTCCCTGTTATCTTCATGGTAT
GAAACCAT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGTATCCCTGGTGAATTTAT
GTATTTGTTTGTCTTACAATGGATCTCTTGGTGCATATTTTCCCCCTAAT
TCATTGTTCCCCTTTATAAAACAGAAGTTCTGATGTTCACATTATGTTTT
CCTTACCAGCTGCCTTTTTAAGTTGTTTAGTTTCTCTTTCAGTCAATTTT
GATATCCAAACATTTGAACATACCATTAGTAAACACTGCTGATTTTGTTT
CACTTCTGTCAATACCTCTTCGCTGCCTTCTAGTCCATTTGCTTCAGGGC
ATTGTCAAATAATGTTTTTTTTTATTGACCCCCTCTCTGTCTTCTGAAAG
AAGATGGNTAGCAAAGCCCGCACGTTCCTTATGAACAAGAGCTGAACATA
AAATTTAGGATGAACACTTCTCTGTACTAAATTCACAGAGAAGCAGAAGT
TCTGCATATTTGCCTTAGGCCAGAACCTTTCAAAGTAGAATATCCAGTGA
GTTCTTCAGATATGTTTTTGCATCATATGTAATAGAATCTGTGTAATACC
ACACATAGTAAAATGTGTATGTTGATGCTGTGTACTACCTTTATAATTTT
TTATCTTGAATATTTTACGTCAGTATTGATAAACGTAACCAGAGTTCTTA
TGGAAAGTCACCATACATAAATATTATTCCAATATAACTATATATAATAA
ATATGTGTACACGCGTGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g03.g1 MSMg01no265_g03.g1 CHROMAT_FILE:
MSMg01no265_g03.g1 PHD_FILE: MSMg01no265_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:51 2005
         (291 letters)



>mm_chr2_100172547_100173237
          Length = 691

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagtatccctggtgaatttatgtatttgtttgtcttacaatggatctcttggtgcat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 actgagtatccctggtgaatttatgtatttgtttttcttacaatggatctcttggtgcat 260

                                                                       
Query: 61  attttccccctaattcattgttcccctttataaaacagaagttctgatgttcacattatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttccccctaattcattgttcccctttataaaacagaagttctgatgttcacattatg 320

                                                                       
Query: 121 ttttccttaccagctgcctttttaagttgtttagtttctctttcagtcaattttgatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttccttaccagctgcctttttaagttgtttagtttctctttcagtcaattttgatatc 380

                                                                       
Query: 181 caaacatttgaacataccattagtaaacactgctgattttgtttcacttctgtcaatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacatttgaacataccattagtaaacactgctgattttgtttcacttctgtcaatacc 440

                                                           
Query: 241 tcttcgctgccttctagtccatttgcttcagggcattgtcaaataatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttcgctgccttctagtccatttgcttcagggcattgtcaaataatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)