BAC Information

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BAC

Clone NameMSMg01-265O18
Chromosome2 (Build37)
Map Location 30,239,817 - 30,401,555
singlet/doubletdoublet
Overlap gene5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l
Upstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2
Downstream geneCstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O18.T7 (MSMg01no265_o18.b1)MSMg01-265O18.TJ (MSMg01no265_o18.g1)
ACCAG407046AG407047
length713725
length of high quality
(start - end)
313 (36 - 348)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no265_o18.b1 PHD_FILE: MSMg01no265_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:34 2005CHROMAT_FILE: MSMg01no265_o18.g1 PHD_FILE: MSMg01no265_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,401,247 - 30,401,555)(30,239,817 - 30,240,096)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCCA
GATTTGACCTCTGACCTGTAGAACTCCGCTGTTGTTTTATGACACTAAAT
CTGGAGTGATTTGTTATGGTAGCCATCACAAAGGGCTGCAAGAGGAGAAA
TGGGGGTGCGAGAGGACAAAGTCTGTGCCCCACAGCGCTGGGGCCAGAGC
CCAGGAGGGCCTCATGGGAGAGGTTGCCTGAAGGCAGTAAGAGAGGCAGA
GGATGCTTGGGCCAGAGAGGTTCCCCACAATTGCTTGGATCTCATTTATT
TCAAGCATCTATTCAACCACGCCGGAAAAGCTTTCCTTACTAGAACTATT
TCTTTTTTTATCCCCCCCCCCCCCAACCTCACTGGTTGAAGTTAAGGTGG
GCTGAGACGCCCAGGGACAGAAAGTGTAAGCAGGGAGCCTGCGCGTTCAC
AGTCATAAAAGATGTTCGCCTGTGGGTTTTTCCTGTAGAAGAGACAGTAG
GTGGGGCTGGTTCTGATCCTTTCCCACCTCTCTCCCATTAATTTTTGTTT
GATTGAATGATTGTTTGTTTAATCCACTCTACAAGCCATAATGAGGAAAG
CGAGGAGTCCGGCTTGTGTTAGGCGCGTCTCCCAACCTCACTGACTGTCT
TCGACTCTCCACCGGGTATCGACCCCCACCGCCTCCTCGTCTTAGTCTGT
TTCCCGCGCTGCC
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAACACCCAGGGGACAAATTTCC
ATGGAGAGGAACCACTAGAAGCACTGATAGCAGCTGCCCTTGGGGTTCCC
TGAGCAGCAGAGGCAGGCCAGAGTCAGCAGGGACTGGCCAGGGGCAGGTA
GCAAGAGAGAAAGGTGTGGGAGCAAATGGCTCTTGAGTATGGACCACAGA
ACCCTAGTCCCCCCCTGCTGCTGAGGGAGGGCAAGGGATAGTTGAGGGAT
AGAACATGCAGGGCTAGGTGGTGACAGTCACAGGGTCCTGCAATTAGCAG
CCACCATTTTCNATANNAAGCCCCACCACCCCCGCTTCTGGCCAGTATGG
AAAGCCATGTCTGGCCCACCCAGAGGAGAAAATAGCCCCATGTGTGCTCA
CATCTGAGCAGGTACTCACCCTTCACAAACCCTTGGCGCTGTTCTCCACA
TTCCCACGCCCTGCCAAAGATTGTTTTTATCCCCTCTGTCACCAAAGATG
GAGGAGGCAGGACTGGCCGCTTCCTGCTCTCTGGTGAGCCAGGAGCTCCT
GGGCAGTGCTGGGCCCCAGTCAGAGCTCACAGTGGCCCATCTCTTGTGTA
GCCATCTACTGCTCCAAAATGAGCGCGGAACCATGTCAGGGTGGGCATGG
GCTGCACAGCGTGCTGCTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o18.b1 MSMg01no265_o18.b1 CHROMAT_FILE:
MSMg01no265_o18.b1 PHD_FILE: MSMg01no265_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:34 2005
         (313 letters)



>mm_chr2_30400956_30401668
          Length = 713

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccagatttgacctctgacctgtagaactccgctgttgttttatgacactaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaattcatccagatttgacctctgacctgtagaactccgctgttgttttatgacactaaa 541

                                                                       
Query: 65  tctggagtgatttgttatggtagccatcacaaagggctgcaagaggagaaatgggggtgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tctggagtgatttgttatggtagccatcacaaagggctgcaagaggagaaatgggggtgc 481

                                                                       
Query: 125 gagaggacaaagtctgtgccccacagcgctggggccagagcccaggagggcctcatggga 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gagaggacaaagtccgtgccccacagcgctggggccagagcccaggagggcctcatggga 421

                                                                       
Query: 185 gaggttgcctgaaggcagtaagagaggcagaggatgcttgggccagagaggttccccaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaggttgcctgaaggcagtaagagaggcagaggatgcttgggccagagaggttccccaca 361

                                                                       
Query: 245 attgcttggatctcatttatttcaagcatctattcaaccacgccggaaaagctttcctta 304
           |||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||
Sbjct: 360 attgcttggatctcatttatttcaagcatcgaaacaaccacgccagaaaagctttcctta 301

                    
Query: 305 ctagaacta 313
           |||||||||
Sbjct: 300 ctagaacta 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no265_o18.g1 MSMg01no265_o18.g1 CHROMAT_FILE:
MSMg01no265_o18.g1 PHD_FILE: MSMg01no265_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:34 2005
         (281 letters)



>mm_chr2_30239617_30240297
          Length = 681

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaacacccaggggacaaatttccatggagaggaaccactagaagcactgatagcagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaacacccaggggacaaatttccatggagaggaaccactagaagcactgatagcagctg 260

                                                                       
Query: 61  cccttggggttccctgagcagcagaggcaggccagagtcagcagggactggccaggggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttggggttccctgagcagcagaggcaggccagagtcagcagggactggccaggggca 320

                                                                       
Query: 121 ggtagcaagagagaaaggtgtgggagcaaatggctcttgagtatggaccacagaacccta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ggtagcaagagagaaaggtgtgggagcaaatggctcttgagtatggaccacagaacccca 380

                                                                       
Query: 181 gtccccccctgctgctgagggagggcaagggatagttgagggatagaacatgcagggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gtccccccctgctgctgagggagggcaagggatagttgagggatagaacatacagggcta 440

                                                   
Query: 241 ggtggtgacagtcacagggtcctgcaattagcagccacca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggtgacagtcacagggtcctgcaattagcagccacca 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)