BAC Information

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BAC

Clone NameMSMg01-266D12
Chromosome2 (Build37)
Map Location 130,628,625 - 130,628,910
singlet/doubletsinglet
Overlap gene4930402H24Rik, LOC100043766
Upstream geneStk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
Downstream geneC030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266D12.T7 (MSMg01no266_d12.b1)MSMg01-266D12.TJ (MSMg01no266_d12.g1)
ACCAG407267AG407268
length731734
length of high quality
(start - end)		282 (80 - 361)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no266_d12.b1 PHD_FILE: MSMg01no266_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:57 2005CHROMAT_FILE: MSMg01no266_d12.g1 PHD_FILE: MSMg01no266_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGATCTGCCAGCCTCTGTTAAGACACAAACTAGTTGGGTATCCT
GTCTGGAAATTACCATTTCTCCCACACCAAGGCCTAACTAACCTTGCTCT
GTTCCAGGCCCACCCTGAACTCAGGACTTTGTCTACCTTTGTAAGCACAA
ACTTAGCTGGGTGGCCTCCTCTAGCAATCAGCACTCCCTAAATCTCTTTA
ACTGCTTCCTCAATATCTTTCTGACAAGTTGGCTCACAGCGAAGCTGCTT
TTGTTCCTTTAGATCTGTGAAGCCCCTCATACAATTCATATTGCATCCTT
CTATTTTTGTATATTTGACCACACCACATAGTTTTGAACTTATGTTCTTT
TCCACAGCCTTACCACCCGACCTGAAGGTCCCAGCATTTATTTCCCAGAC
TCACGCTGGCTCTGATTATCATGAAGTCATTCACATTAACAGAAGGACAT
TCCTCAGAAGAGGAGCATGAAATATGTACATTATTATACAAACAGGTTTA
TGTCTATAGTGTAACATCCATGGAGGCCCGGGCCTGCTGCCCCTCCCAGG
GCTGGAACCATGTCATTCTGTCCCAACCAGGACCATGCTGGACTCCTCAG
TTCCCCCTCTTTTGTTACTAATTTGAGGGCGCAAATGTTGACTGCGAGCG
CTTGACTTGCNTGATGTAGACTAATAGATGA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCACTTTGTTGGAGAAAGTGGAT
GCTGAAGGTGGACGACATTTGTCTGAAGAATGTCTGGAGACCTTTTGAAA
GCATGTGTGTTGTGACCACATCTAATAGGAAAGCACAGGTTTATTCCATG
AACCTGATACAAAGCTCACATCTCTAGTTTTAACTTAGTGTCTGTAGATA
TATACAAGCATGAGATCCAAGCATGACATCGAAGTCAAATGTACAACTTA
AAACGTCTTACCAAACTGACCATAAGAAAACCATCTTCCCTGCATTGTGA
GATCCTAAATTTTTTTTGAGTCCTGACCCACAACACACCTGGCCTTGTCC
ATCCTTGTGGATGTACCTGCTTTGATAGTTCTTGGTTGGGCTACAGTCCA
AGTTGTAGTAGCTTTGCCATTAAAATATTACAGTAATGAAAACCCTTTAA
AAACAACAAAAGATGAAACACTTTTGAATAAATGTCTACCCCCAACACAC
ACACATACACACCAAAAAATGTTGTCGTAAAAAACAACTATGGTTATTTA
TTTATTTTTTTTAAGAAAAGTATCTGTGGGGTCCAAATTCCAGGTTGCTC
TCTTCATCTCTGAGAGAATTTTACCCTGTATCGAAATCATTCGCTCTTCT
GCGGAGGGCTCAGCTTTCTCATGCCTCTTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_d12.g1 MSMg01no266_d12.g1 CHROMAT_FILE:
MSMg01no266_d12.g1 PHD_FILE: MSMg01no266_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:57 2005
         (289 letters)



>mm_chr2_130628425_130629113
          Length = 689

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcactttgttggagaaagtggatgctgaaggtggacgacatttgtctgaagaatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcactttgttggagaaagtggatgctgaaggtggacgacatttgtctgaagaatgtct 260

                                                                       
Query: 61  ggagaccttttgaaagcatgtgtgttgtgaccacatctaataggaaagcacaggtttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagaccttttgaaagcatgtgtgttgtgaccacatctaataggaaagcacaggtttatt 320

                                                                       
Query: 121 ccatgaacctgatacaaagctcacatctctagttttaacttagtgtctgtagatatatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgaacctgatacaaagctcacatctctagttttaacttagtgtctgtagatatatac 380

                                                                       
Query: 181 aagcatgagatccaagcatgacatcgaagtcaaatgtacaacttaaaacgtcttaccaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aagcatgagatccaagcatgacatcgaagtcaaatgtacaacttaaaatgtcttaccaaa 440

                                                         
Query: 241 ctgaccataagaaaaccatcttccctgcattgtgagatcctaaatt 286
           ||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 441 ctgaccatatgaaaaccatcttccctgcattgcgagatcctaaatt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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