BAC Information

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BAC

Clone NameMSMg01-267B04
Chromosome2 (Build37)
Map Location 78,785,969 - 78,786,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267B04.T7 (MSMg01no267_b04.b1)MSMg01-267B04.TJ (MSMg01no267_b04.g1)
ACCAG407893AG407894
length724703
length of high quality
(start - end)
321 (45 - 365)217 (72 - 288)
definitionCHROMAT_FILE: MSMg01no267_b04.b1 PHD_FILE: MSMg01no267_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:02 2005CHROMAT_FILE: MSMg01no267_b04.g1 PHD_FILE: MSMg01no267_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCTTATCAGGCACCCACACCACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAACATATAATTTGCTAATCACATGAAACTCAAG
AAGAATGATGACTGTAGTGTGCAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCGTTCTTCATCTGACCTCTCTCAAGG
CAGCTTTTGAGCTTTTGTTTTTCTGTTTTTTCTCTTCTTGCTTCTCTTTC
TTCTACCTTTACTCATTTATTCATCTTTTATCCAGTTAATACAGAGAGAG
AGAGAGAGAGACAAGAACCCTTCCCTTGTGCAAAAAGCCTTTGTCTTTAT
GATGTTGTTTGCACTGACCTCTGTCTGCCCATGATGCGCAAGTGCCAAAT
ATGTTCATGATGAAAAGAATCTCTTCTCCTANAGATCGGNNNNCTGTAAA
ATCCCAAAATACACTTANNNCCCGTCTATGAAAAAAAATTTTCTTCCACT
TCCCTAAATTTTTCCAAAAAGGGATTTGGTTAAAAAAACTTTCCCGGTTT
TTCGGNCTCNNNNTGNNGTTTTTTTATTAGTCNNNNNNNNNNNNNCTTCT
GTGGCGTCTGGNNGGGCTAAGGAANCTNNNNAAGGGNNAGCCNNNNNNNN
NNNNNNNCNNNNNNNNNCGGGTGTATGTGGGGGGCTGANNNNGGATTTTT
CAGGNNNNNNNTCTTTTTTTNTTTNTTTTTTNTTTTTTNTTTAAGGGGGG
GNCCCTCNNTTTNTTNTTNCNCCNNNNNNNNNNNNANNNACGATAAAAAG
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_b04.g1 MSMg01no267_b04.g1 CHROMAT_FILE:
MSMg01no267_b04.g1 PHD_FILE: MSMg01no267_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:02 2005
         (217 letters)



>mm_chr2_78785769_78786386
          Length = 618

 Score =  360 bits (186), Expect = e-104
 Identities = 216/230 (93%), Gaps = 13/230 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcgttcttcatctgacctctctcaaggcagcttttgagcttttgtttttctgtttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcgttcttcatctgacctctctcaaggcagcttttgagcttttgtttttctgtttttt 260

                                                                       
Query: 61  ctcttcttgcttctctttcttctacctttactcatttattcatcttttatccagttaa-t 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ctcttcttgcttctctttcttctacctttactcatttattcatcttttatccagttaagt 320

                                                                       
Query: 120 acagagagagagagagagaga-------caagaacccttcccttgtgcaaaa-agcc-tt 170
           |||||||||||||||||||||       |||||||||||||||||||||||| |||| ||
Sbjct: 321 acagagagagagagagagagagagaggacaagaacccttcccttgtgcaaaacagccatt 380

                                                             
Query: 171 tgtctttatgatgttgtttg-cactgacctctg-tctgc-ccatgatgcg 217
           ||||||||||||||| |||| |||||||||||| ||||| ||||||||||
Sbjct: 381 tgtctttatgatgttttttgtcactgacctctgctctgcaccatgatgcg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 618
Length adjustment: 9
Effective length of query: 208
Effective length of database: 609
Effective search space:   126672
Effective search space used:   126672
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)