Query= MSMg01no267_j12.b1 MSMg01no267_j12.b1 CHROMAT_FILE:
MSMg01no267_j12.b1 PHD_FILE: MSMg01no267_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:42 2005
(314 letters)
>mm_chr2_144201692_144202407
Length = 716
Score = 524 bits (271), Expect = e-153
Identities = 304/319 (95%), Gaps = 9/319 (2%)
Strand = Plus / Plus
Query: 5 gaattcttgagaatcttaatcaatttcatttatatcatactgaacttagacccacagcga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagaatcttaatcaatttcatttatatcatactgaacttagacccacagcga 264
Query: 65 aaaccagctgaaaaccatgcccacgattcttttt--attttttatttttggcagtcattt 122
||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||
Sbjct: 265 aaaccagctgaaaaccaggcccacgatttttttttaatttttaatttttggcagtcattt 324
Query: 123 caagcataacaaagccagaggcggctactttggagtaagatttggcagaaaccgtttgac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caagcataacaaagccagaggcggctactttggagtaagatttggcagaaaccgtttgac 384
Query: 183 ttgatagcaaagacaatgtaaacaactggtgtagacttcctgcattggaacttggagaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgatagcaaagacaatgtaaacaactggtgtagacttcctgcattggaacttggagaca 444
Query: 243 agtctttatttatggataaatactttatttatttattta--tttatt-----gtttttcg 295
|||||||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct: 445 agtctttatttatggatagatactttatttatttatttaattttatttttttgtttttcg 504
Query: 296 agacagggtttttcagtat 314
|||||||| ||||| ||||
Sbjct: 505 agacagggattttctgtat 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 716
Length adjustment: 9
Effective length of query: 305
Effective length of database: 707
Effective search space: 215635
Effective search space used: 215635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_j12.g1 MSMg01no267_j12.g1 CHROMAT_FILE:
MSMg01no267_j12.g1 PHD_FILE: MSMg01no267_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:42 2005
(289 letters)
>mm_chr2_144358933_144359620
Length = 688
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtctcgaaaaacaagaccaacgaaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 535 caggacagccagggctacacagagaaaccctgtctcgaaaaacaagaaaaacgaaaacaa 476
Query: 61 acaaacaaaaaccaaaaaaaaagactgtaaatgaaaaggaacttaaatttgaatcatgtt 120
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 475 acaaacaaaaacc-aaaaaaaacactgtaaatgaaaaggaacttaaatttgaatcatgtt 417
Query: 121 catctgccatcttcaaccatggggtgggggtgggggatacaaaagtttacctgcttcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 catctgccatcttcaaccatggggtgggggtgggggatacaaaagtttacctgcttcaat 357
Query: 181 tcatgtacatctattatttaaacaacatcctacttgtaagatggaaaaaaataaggctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcatgtacatctattatttaaacaacatcctacttgtaagatggaaaaaaataaggctat 297
Query: 241 ggttcttaaactcaatacccattgtgggaagttatgagttttccttc 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggttcttaaactcaatacccattgtgggaagttatgagttttccttc 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
