Query= MSMg01no269_a08.b1 MSMg01no269_a08.b1 CHROMAT_FILE:
MSMg01no269_a08.b1 PHD_FILE: MSMg01no269_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:24 2005
(323 letters)
>mm_chr2_115453846_115454568
Length = 723
Score = 617 bits (319), Expect = 0.0
Identities = 319/319 (100%)
Strand = Plus / Minus
Query: 4 ggaattcacaccatggcagcagtaaactccagtctgtctagtgtccagttctgagaggtt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggaattcacaccatggcagcagtaaactccagtctgtctagtgtccagttctgagaggtt 268
Query: 64 aactcactaccctccaacctcacccgccacttgtcttatttcaaggatgaagaaatgcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aactcactaccctccaacctcacccgccacttgtcttatttcaaggatgaagaaatgcag 208
Query: 124 gaagaaacccttagccagactcactagagggcacagggacagcatcctgattaacaaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaagaaacccttagccagactcactagagggcacagggacagcatcctgattaacaaaat 148
Query: 184 cagaaatgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cagaaatgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatc 88
Query: 244 cttctacaaaaggctatactcaacaaaactggagaacctggatgaaatggacaagtttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cttctacaaaaggctatactcaacaaaactggagaacctggatgaaatggacaagtttct 28
Query: 304 agacagataccaggtacca 322
|||||||||||||||||||
Sbjct: 27 agacagataccaggtacca 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_a08.g1 MSMg01no269_a08.g1 CHROMAT_FILE:
MSMg01no269_a08.g1 PHD_FILE: MSMg01no269_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:24 2005
(656 letters)
>mm_chr2_115314026_115315080
Length = 1055
Score = 1237 bits (640), Expect = 0.0
Identities = 652/656 (99%), Gaps = 1/656 (0%)
Strand = Plus / Plus
Query: 1 ctccctggttgccttcactcactgctcatccaagaaatcatctgctcttgcttcctacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctggttgccttcactcactgctcatccaagaaatcatctgctcttgcttcctacct 260
Query: 61 ctcggctctgagaattggttcactccccttgtttggttccatttggttttggcaactgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcggctctgagaattggttcactccccttgtttggttccatttggttttggcaactgtc 320
Query: 121 cccagactgtttaccttccgttctgaccttggacaccccaagcattgcctctgctaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagactgtttaccttccgttctgaccttggacaccccaagcattgcctctgctaattg 380
Query: 181 cctccgccttcattggcttcaaattcaaaactgttgcccaggccccaggcctctgagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccgccttcattggcttcaaattcaaaactgttgcccaggccccaggcctctgagaca 440
Query: 241 ccacctgctccatctcacagtaaagggatcattttttttatttctttggacaacatccat 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ccacctgctccatctcacagtaaagggatcattttttt-atttctttggacaacatccat 499
Query: 301 cttatcaggttcattcaaagctcaaatttatgtgtaatgggcacttaaaacccagtccgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttatcaggttcattcaaagctcaaatttatgtgtaatgggcacttaaaacccagtccgc 559
Query: 361 aatagcactaaaaagttcctagccaagaaagtgaaagaaatgttcctttccaattaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatagcactaaaaagttcctagccaagaaagtgaaagaaatgttcctttccaattaaagg 619
Query: 421 cacctacgtggacagtgcacacagccgagaaagggatgcttttgataatgtcatgtgtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacctacgtggacagtgcacacagccgagaaagggatgcttttgataatgtcatgtgtgg 679
Query: 481 ggaaaatgtgaaaaataattagaagtcgaagtaaataaaaaaataaataaatgaatggca 540
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 680 ggaaaatgtgaaaaataattagaagtcaaagtaaataaaaaaataaataaacgaatggca 739
Query: 541 gacatgttataaagaacttctgtactctaaataagtgcatcttataaaaactcattcaac 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gacatgttataaaaaacttctgtactctaaataagtgcatcttataaaaactcattcaac 799
Query: 601 acaagtctcccatgcagaatatttctgatatatgaccaaccattcagattctgttt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acaagtctcccatgcagaatatttctgatatatgaccaaccattcagattctgttt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
