Query= MSMg01no269_m21.b1 MSMg01no269_m21.b1 CHROMAT_FILE:
MSMg01no269_m21.b1 PHD_FILE: MSMg01no269_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:20 2005
(639 letters)
>mm_chr2_48445191_48446230
Length = 1040
Score = 1207 bits (624), Expect = 0.0
Identities = 633/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcctgattaaataatatgcaaagaaggtaaaggaagtaatgactaacataaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaattctgcctgattaaataatatgcaaagaaggtaaaggaagtaatgactaacataaac 781
Query: 65 agtttggccttacttacatatcttctgcctcctgcagataaattgtggggccctgtgcac 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 780 agtttggccttacttacatatcttctgcctcatgcagataaattgtggggccctgtgcac 721
Query: 125 aaacggagacattcataacttgtagaaaaaggcctggatatctatacctacgtataaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaacggagacattcataacttgtagaaaaaggcctggatatctatacctacgtataaatg 661
Query: 185 tcccctgggagctgtaatgcttattttgtgaaatagtaaacgatttcatcccacttctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcccctgggagctgtaatgcttattttgtgaaatagtaaacgatttcatcccacttctgg 601
Query: 245 ttttgaggatttatggcctttccacaaagcaaacaaacaacagcttatgccgtctagctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttttgaggatttatggcctttccacaaagcaaacaaacaacagcttatgccgtctagctg 541
Query: 305 ggtagtatgttttaaatccattctccttttcactattggatgaagcagagatgaggggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggtagtatgttttaaatccattctccttttcactattggatgaagcagagatgaggggca 481
Query: 365 gaggcaaacaaggaatattagagcaggattctagagaaagctgccttttttgtttccaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaggcaaacaaggaatattagagcaggattctagagaaagctgccttttttgtttccaga 421
Query: 425 aaacattatgtggaaaatggtgggaaggcaagtggtcaggtaactagacaaggaaaagtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaacattatgtggaaaatggtgggaaggcaagtggtcaggtaactagacaaggaaaagtc 361
Query: 485 tgggagtgggaaggggtgggggg-aagccaggagccctataaaatatccaagccagcatc 543
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgggagtggggaggggtgggggggaagccaggagccctataaaatatccaagccagcatc 301
Query: 544 tgcttaccagacttccagattcaggcttctcccatcctgaatgtataaagctgttccttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgcttaccagacttccagattcaggcttctcccatcctgaatgtataaagctgttccttt 241
Query: 604 ccctttcttcacagcttgctcttctggattttctag 639
||||||||||||||||||||||||||||||||||||
Sbjct: 240 ccctttcttcacagcttgctcttctggattttctag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space: 647870
Effective search space used: 647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_m21.g1 MSMg01no269_m21.g1 CHROMAT_FILE:
MSMg01no269_m21.g1 PHD_FILE: MSMg01no269_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:20 2005
(294 letters)
>mm_chr2_48325107_48325800
Length = 694
Score = 545 bits (282), Expect = e-160
Identities = 291/294 (98%)
Strand = Plus / Plus
Query: 1 acctcttctcttaaaaaactaacaatagtactaaagtagaaaagcctgccatgttgaata 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 acctcttctcttaaaaaactaacaatagtactaaagtagaaaagccagccatgttgaata 260
Query: 61 ttgtctagatagttctaccactaggctgctgtagagactcttaacaaaagacagtttgct 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtctagatagttctaccaccgggctgctgtagagactcttaacaaaagacagtttgct 320
Query: 121 cgattttgctacttaaaaaatatcagttactgctcatttactgatgatgtaaatcaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgattttgctacttaaaaaatatcagttactgctcatttactgatgatgtaaatcaaagt 380
Query: 181 cccggaagaaataatctatcattcctaacaaactgttttcaaaagatctttatactcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccggaagaaataatctatcattcctaacaaactgttttcaaaagatctttatactcatc 440
Query: 241 catcagtacccagaattacacaagctctgcctgagttgcaaatattttaaaagc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcagtacccagaattacacaagctctgcctgagttgcaaatattttaaaagc 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
