BAC Information

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BAC

Clone NameMSMg01-270K05
Chromosome2 (Build37)
Map Location 82,165,935 - 82,358,334
singlet/doubletdoublet
Overlap geneLOC100041308, A130030D18Rik, EG624362, LOC433550
Upstream geneLOC100040704, Zfp804a
Downstream geneLOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270K05.T7 (MSMg01no270_k05.b1)MSMg01-270K05.TJ (MSMg01no270_k05.g1)
ACCAG410417AG410418
length735739
length of high quality
(start - end)		691 (40 - 730)485 (76 - 560)
definitionCHROMAT_FILE: MSMg01no270_k05.b1 PHD_FILE: MSMg01no270_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:20 2005CHROMAT_FILE: MSMg01no270_k05.g1 PHD_FILE: MSMg01no270_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,357,959 - 82,358,334)(82,165,935 - 82,166,395)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCACTTACATAGAGCCTATATCTACATTCAGACATAACCATATAGATGCA
TGGGATGTTGGTAAAATATATTTGTTACTAATGCTCACAAATGTTTCCTT
TCAATCGTAGACTTTAGTCTTTTGGAGGCTGCTGCGTTGTAACAAACTCT
AAACACTGGTTTAATATGCTCAGCAGTGGGAGATGGAACCTGAAGAGACC
ACCTCTAATAGATAGGGCCCCCAGTGGAGGAATGGAGTCACCAACCTATC
TTCAAATTTTTGACCAGGAATTATTCCTGTCTAAAAGAAACACAGGGGGC
AAAAAGGGAGCAAAGACTGAAGGAAAGGCCATTCACTGACTGGCCCAACT
TGGGATCCATCCCAAGTGCAGGCTCCAAACTGATACTATTACTGATGTCA
TGTTGTGCTTACAAACAGGAGCTCAGCATGGCTGTTCTAGGAGAGGTTCT
ACCAGCAGCCTCTCAGAGGCAAAAAGGAGAGGAATGGGCTGAAGAACTCT
TGGAGGGGGATCCTGGAAGGNGGCAACACTTGGAATGTAAATAAAGCAAT
AAAAAACTATTGCCTTTTACCTGTCTTCTCTCCCATTCAGGCACTGGCTT
TCAGCATATTCCTCTAATTCATATCTCATAGGCAGAGACTATGTTATTGA
GACATGAATTATGAGTCATTGGAAAGAAGTAAATT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAAAAATTCTGCTTTGATGA
TCAAAGAACTTGCATTTTTGACCAGTTCTCATGAGACGCAAAGTTCACAA
GTCTAGAAATTATGTGAGTCCTGGTGGGTTGGGATAAAGAAGCTAATATT
TCACTAAAAATTAATGTATATTTGCCTTGTTTTTAGTAGTATAATAAATG
TGATATATTTAGGTACCTAGCAAAGATCAAGATTCATTTTCATTTCACAT
CTACTGCTATTACAAGCATATTTAGAAGTATTTTGGGGGAGCTGGAGGGA
TGACTCAGCACTTATTAGCACTGGCTACTCTTCCAGGGGTACTGAACTCA
GCACCTACATGGTGGTTCACAACCATCTATAACTGTACTATAGTTCCATG
GACTCTGATGATCTCTTCTGGTGTGCAAGTATCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTTTTTTCCTAATNCCTGGATCAATAACCTGTACGATCTC
TGATTTTGACGCCTGTGTGTTATATATTGTGCAATCCCGGACATCCAGAA
CTACACAGAAAAATTCTGTCTAATAACAGGCAATACCAAATGACGACTTT
TGTCACTACAGTGCGCTGAATAGGTTTGCCCGAACACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_k05.b1 MSMg01no270_k05.b1 CHROMAT_FILE:
MSMg01no270_k05.b1 PHD_FILE: MSMg01no270_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:20 2005
         (691 letters)



>mm_chr2_82357959_82359049
          Length = 1091

 Score =  696 bits (360), Expect = 0.0
 Identities = 372/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccacttacatagagcctatatctacattcagacataaccatatagatgcatg 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 376 ggaattctccacttacatagagcctatatctacattcagacataaccatacagatgcatg 317

                                                                       
Query: 64  ggatgttggtaaaatatatttgttactaatgctcacaaatgtttcctttcaatcgtagac 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 316 ggatgttggtaaaatatatttgttactaatgctcacaaatgtttcctttcaatcttagac 257

                                                                       
Query: 124 tttagtcttttggaggctgctgcgttgtaacaaactctaaacactggtttaatatgctca 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 tttagtcttttggaggctgctgctttgtaacaaactctaaacactggtttaatatgctca 197

                                                                       
Query: 184 gcagtgggagatggaacctgaagagaccacctctaatagatagggcccccagtggaggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gcagtgggagatggaacctgaagagaccacctctaatagatagggcccccagtggaggaa 137

                                                                       
Query: 244 tggagtcaccaacctatcttcaaatttttgaccaggaattattcctgtctaaaagaaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tggagtcaccaacctatcttcaaatttttgaccaggaattattcctgtctaaaagaaaca 77

                                                                       
Query: 304 cagggggcaaaaagggagcaaagactgaaggaaaggccattcactgactggcccaacttg 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  caggggtcaaaaagggagcaaagactgaaggaaaggccattcactgactggcccaacttg 17

                           
Query: 364 ggatccatcccaagtg 379
           ||||||||||||||||
Sbjct: 16  ggatccatcccaagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_k05.g1 MSMg01no270_k05.g1 CHROMAT_FILE:
MSMg01no270_k05.g1 PHD_FILE: MSMg01no270_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:20 2005
         (485 letters)



>mm_chr2_82165735_82166619
          Length = 885

 Score =  837 bits (433), Expect = 0.0
 Identities = 454/461 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcagaaaaattctgctttgatgatcaaagaacttgcatttttgaccagttctcatgag 60
           |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||
Sbjct: 201 ttgcagaaaaattctgctttgatgatcaaagaacttgcatttctgaagagttctcatgag 260

                                                                       
Query: 61  acgcaaagttcacaagtctagaaattatgtgagtcctggtgggttgggataaagaagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgcaaagttcacaagtctagaaattatgtgagtcctggtgggttgggataaagaagcta 320

                                                                       
Query: 121 atatttcactaaaaattaatgtatatttgccttgtttttagtagtataataaatgtgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttcactaaaaattaatgtatatttgccttgtttttagtagtataataaatgtgata 380

                                                                       
Query: 181 tatttaggtacctagcaaagatcaagattcattttcatttcacatctactgctattacaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttaggcacctagcaaagatcaagattcattttcatttcacatctactgctattacaa 440

                                                                       
Query: 241 gcatatttagaagtattttgggggagctggagggatgactcagcacttattagcactggc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 441 gcatatttagaagtattttgggggagctggagggatgactcagcacttaagagcactggc 500

                                                                       
Query: 301 tactcttccaggggtactgaactcagcacctacatggtggttcacaaccatctataactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactcttccaggggtactgaactcagcacctacatggtggttcacaaccatctataactg 560

                                                                       
Query: 361 tactatagttccatggactctgatgatctcttctggtgtgcaagtatctctctctctctc 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactatagtcccatggactctgatgatctcttctggtgtgcaagtatctctctctctctc 620

                                                    
Query: 421 tctctctctctctctctctctctctctctctctctctctct 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctctctctctctctctctctctctctctctctctctct 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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