BAC Information

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BAC

Clone NameMSMg01-270K19
Chromosome2 (Build37)
Map Location 85,049,218 - 85,049,432
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
Downstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270K19.T7 (MSMg01no270_k19.b1)MSMg01-270K19.TJ (MSMg01no270_k19.g1)
ACCAG410444AG410445
length726760
length of high quality
(start - end)		660 (43 - 702)348 (377 - 724)
definitionCHROMAT_FILE: MSMg01no270_k19.b1 PHD_FILE: MSMg01no270_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:23 2005CHROMAT_FILE: MSMg01no270_k19.g1 PHD_FILE: MSMg01no270_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACGAAATTCCTAGGCAAATGGTTGGACCTGGAAGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAAGAACTCAAATGAAATGTACTCACTGATAAG
TGGATATTAACCCAGAAACTTAGTGTAGGGAGATATAACATACAATATGT
AAAACATATGAAACTGAAGAAGAAGGAAGACCAAAGTGTGGACACTTTGC
TCATTCTTAGAATTGGAAACAATCAGCCATGGAAGGAGTTACAGAAACAA
AGTTTGGAGCTGAGACAAAAGGATGGTCCATCTAGAGACTGCCATATCCA
GGGATCCATCCCATATTTAGCCTCCAAGCGATGACAACATTGCATGCACT
AGCAAGCCTTTGTTGCAAGGACGGTGATATAGCTGTCCCTTGTGAGACTA
GGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGA
TGGATCACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTATCCAAGGAGCT
AAAGAGTTCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTA
CCCCAGAGCTCTTGACTCTAGCTGCATATGTATCANAAGATGACCTAGTC
GGCCATCACTGGAAAGAGAGGCCCATTGGTCAGGCAAACGTTATATGGCC
CAGTACAGGGGAATGCCAGGGCCAAN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATTTTGAGCATCAGGCCAGCTGTGACTGCTTG
AGCCTCCACTTATAAACCCCCAGCAGATATAGTGGCCAAAAATCTATGTA
GTGATACCACTGTTATCCACTGGTGGACAAGACAAACAGATTTCATCACT
TGTAGAAGGGAAATAGATTGAAGGGATAAACAAAAGAGATTCATAGTAGG
ATAGTAGGATGTAGAAATAAGAGACATCACCTCTCTGCCACCCTGTAGGA
GGTCATTCTTGTTCTGGAAAAGACAGGCTGGGGCAGAGGAAAGAGACTGA
CCATTCTTTAGTTGACCATGCCCCACCACTATGGGTATGGAAAGAAATCA
GTATATACATAGCTGCTGTTCAACAAGGGTGGCTTAGCTTCATCGACTTT
TTGAGTGCCTATTGGGTACTAGATGTGGAGCCATCTCAAATGCTGTAGTA
CAGCCAACTTTGATTAGCTTGGAGTGCTGTGTGCATCTGTGTTCAGATGG
GTCAGTTTCCAGGAAGCCTAGTTAATTATTTTGATTGCACATCCTCTTTA
GTGGTTAAACCAAACAAACTGCTGTTTTCTTCAGTCTTGGTTGGAAGACA
CAGATAATAAACGCACAGAGAAATGATTCAATGGATAAGTGCTGTGGATT
AAAAAAAAACAACAAATCAAATCAAGGCATAGGAGTGGCGGTTAAGTTAC
ACAACGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_k19.g1 MSMg01no270_k19.g1 CHROMAT_FILE:
MSMg01no270_k19.g1 PHD_FILE: MSMg01no270_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:23 2005
         (348 letters)



>mm_chr2_85049018_85049765
          Length = 748

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactatgggtatggaaagaaatcagtatatacatagctgctgttcaacaagggtggctta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cactatgggtatggaaagaaatcagtatatacatagctgctgttcagcaagggtggctta 260

                                                                       
Query: 61  gcttcatcgactttttgagtgcctattgggtactagatgtggagccatctcaaatgctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcatcgactttttgagtgcctattgggtactagatgtggagccatctcaaatgctgt 320

                                                                       
Query: 121 agtacagccaactttgattagcttggagtgctgtgtgcatctgtgttcagatgggtcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtacagccaactttgattagcttggagtgctgtgtgcatctgtgttcagatgggtcagt 380

                                              
Query: 181 ttccaggaagcctagttaattattttgattgcaca 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccaggaagcctagttaattattttgattgcaca 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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