BAC Information

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BAC

Clone NameMSMg01-271B23
Chromosome2 (Build37)
Map Location 88,284,282 - 88,284,958
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181
Downstream geneOlfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271B23.T7 (MSMg01no271_b23.b1)MSMg01-271B23.TJ (MSMg01no271_b23.g1)
ACCAG410765AG410766
length767755
length of high quality
(start - end)		286 (436 - 721)677 (68 - 744)
definitionCHROMAT_FILE: MSMg01no271_b23.b1 PHD_FILE: MSMg01no271_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:56 2005CHROMAT_FILE: MSMg01no271_b23.g1 PHD_FILE: MSMg01no271_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTATGTAATTCTTCCTTGCCTATCTCTTTATTGATTACTATTTTTCTGTC
AATACCACTAAAATGAATTTGTATTCATTTGAAGAAAAAATACTATCCAA
TTTAATGGATGCATGATAGGGTTACACAAATCCTTGAGATGTTAACCCTC
TCCTTCCCAAGATTATTCTCACTCTTTCACAGGGTAACGTGTTATAAACA
CCCAGTATTAACTTGCAGCATTCAACTTTTGGGGATAAGGTAAGAGGCAT
ATCTGTGGCTAGAACCAAAGCTGCACTCCTTTCTATAGCATATATAAATG
ATAAAAAATACTTAANTTGACCCCCCCATCTGCTTGGGTCCTTCTGACAA
ACCAAAGGAATAAAACTTATATTGATAAACAGATGGGCCTCAAGCTGACA
AGCCCCTCTGTTCATTACCCCAGCGCAAATGTTTATTTCATATATCTCTC
TTGGATCTGCAGTACATTGACAAGTGTTTGCCCTTTCCACCATGGCTGCA
ACACTTTGTGATTCATAGTAAGCAGAACCTGTTTGTTCTCTTGTGTGAAC
ACTATATTCACCAGAGTCAATGTATCTTCTATTTTGAGCTCTGAATATTC
AAGCTTTACAATTTCTTTGGAAATGATCTAATTCACCACAACAAAATCAT
CAGGCATTTTGATGTCTGAGACTTCTAACTATGGATTTCCCTATGATGTT
AGCATGATGATCCTGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGAAAATAGATATAAAATGGCTATCAATCAT
GAAATGTATATATCTCTGCATGTTGTTAGGCAAGTAAGTGACCTCCACTA
AAACTGAAGCAAACAGGTTTTAGGGGGAAAGAGTGAGCCTAGAAAAGCAC
ATAAATATATGAATGTAGAAAGTAAAATATAGAGAAGATAAGCTATAATA
GAACAAGGAATTTGGGACAAATGAAGGCAATGGAATACATGTAACATAAA
AACAGACAATTTAAAGGAAAGGAACCAGATATTACTATTATTATGCTAAG
GAAACATAATAATAAAATGACTTCCAATGACACAATTGCTATATTGGTAA
ATCAGTGTATCACCCAGCCTTAATCAGAGAAGTTTCCTCTTATAGTAGAT
GGCAATTAAAAAAGAATCCTACAATTTAACATTGTGCAGAGTGAGAGACT
TTGGAACACTCAGCATTAAATGGAATGTGTTTATTAAACTGCTCCCCGTA
AGGCTTAGCATCTGTCCTGAAGAAGAATCAGAAAAGTTATAAGAGCCAGA
GATGGTAAATGATGCTAAGAAAAATCACCATTCAGAAACAATAGAGCTGA
TATACAACTGAAGTCACAGAGAGTATGAGAGCAAGTCACCACCTATACAT
GTTCAATTTGGACTAAATCCCATAATGACAAAGTAGAAGAAGACACAAAA
TTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_b23.g1 MSMg01no271_b23.g1 CHROMAT_FILE:
MSMg01no271_b23.g1 PHD_FILE: MSMg01no271_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:56 2005
         (677 letters)



>mm_chr2_88284082_88285158
          Length = 1077

 Score = 1257 bits (650), Expect = 0.0
 Identities = 671/678 (98%), Gaps = 2/678 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaaatagatataaaatggctatcaatcatgaaatgtatatatctctgcatgttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttgaaaatagatataaaatggctatcaatcatgaaatgtatatatctctgtatgttgtt 260

                                                                       
Query: 61  aggcaagtaagtgacctccactaaaactgaagcaaacaggttttagggggaaagagtgag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaattaagtgacctccactaaaactgaagcaaacaggttttagggggaaagagtgag 320

                                                                       
Query: 121 cctagaaaagcacataaatatatgaatgtagaaagtaaaatatagagaagataagctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaaaagcacataaatatatgaatgtagaaagtaaaatatagagaagataagctata 380

                                                                       
Query: 181 atagaacaaggaatttgggacaaatgaaggcaatggaatacatgtaacataaaaacagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagaacaaggaatttgggacaaatgaaggcaatggaatacatgtaacataaaaacagac 440

                                                                       
Query: 241 aatttaaaggaaaggaaccagatattactattattatgctaaggaaacataataataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttaaaggaaaggaaccagatattactattattatgctaaggaaacataataataaaa 500

                                                                       
Query: 301 tgacttccaatgacacaattgctatattggtaaatcagtgtatcacccagcct-taatca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 501 tgacttccaatgacacaattgctatattggtaaatcagtgtatcacccagcctcta-tca 559

                                                                       
Query: 360 gagaagtttcctcttatagtagatggcaattaaaaaagaatcctacaatttaacattgtg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagaagtttcctcttatagtagatggcaattaaaaaagaatcctacaatttaacattgtg 619

                                                                       
Query: 420 cagagtgagagactttggaacactcagcattaaatggaatgtgtttattaaactgctccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagagtgagagactttggaacactcagcattaaatggaatgtgtttattaaactgctccc 679

                                                                       
Query: 480 cgtaaggcttagcatctgtcctgaagaagaatcagaaaagttataagagccagagatggt 539
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 680 cgtaaggcttagcatctgtcctgaagaagaatcagaaaagttttaagagccatagatggt 739

                                                                       
Query: 540 aaatgatgctaagaaaaatcaccattcagaaacaatagagctgatatacaactgaagtca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaatgatgctaagaaaaatcaccattcagaaacaatagagctgatatacaactgaagtca 799

                                                                       
Query: 600 cagagagtatgagagcaagtcaccacctatacatgttcaatttggactaaatcccataat 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagagagtatgagagcaagtcaccacctatacatgttcaatttggactaaatcccataat 859

                             
Query: 660 gacaaagtagaagaagac 677
           | ||||||||||||||||
Sbjct: 860 ggcaaagtagaagaagac 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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