TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCGGAATGCTGAGATAATGCCTGAACTTGCTGAGCCCTCCTGCCTC
CTGCCACCTCCATCAAGTTCTATCTTTGTCTTAGGCCCTGAGTCATGCCC
TACACCGACCCCTCAGTCATCTGTGACTCATAGCAGAGAGCAGTTATACC
CAATGCTGAGCCACAGGAGCAGACGATTATTCTATTCTTCTTTATTCTCT
CATTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTC
TTNCTTTTNNCTGNTCTCGGAGCTTTGCCCCCTTCNTTCGTTCTTTCTTT
CTTTCTTTCGGCCCCCCTTTCAAAAAAAAAAATACTTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCCCCCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTCCTCCGTCATTCTTCCATTCTTTGCTTCTGAAA
GTATCTGTATCAGATCAGGACCCCGAGACCAAGTTCTAAGCACAAAGTAG
ATTTATTTGCTCCAGATGGACNAAGGACTGAGAATAAGAGACAAAGACCG
GATGAAGACAAAAGTTGAGATGATAAAGGACAGGGATGAAGTGGAAG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTCACTTTATCTCATTTTGGTTATAA
GCTTTATATAAGATTCATATACCCCCTTTTAAAACATAAAAATGTCTTTG
ATAGATGAAGAATTAAAAAAGGTGTGTGTGACCCATAGTTACAGGAATGG
TTCCAGAATAACAAAAGGCTGTGATCTTTAAGAGTTAAAAGGCTCCACCT
TCCTCTGCCTTTCCCCTTTCCCTCCTTAGCCTTTATTTACTTTCCCTTTT
CGCCTAATCTTTTAATAATGTATACCATGATAACTTAACCCTCCTTGGTG
CCAGCTAAAATACNTTTTGTCCCCCCCCCCCCCACAGAAGCTCAACCTTT
ATTTCTGGAGCTAAAACCACACTGAATAAAGACAGTATGTATCTGATAGT
TCGTATTCAGAGGTATGAAGAGCAAGAATAACTGCAGAGTGGAAACAAAT
GTCACTCTTAACTTCACTTTTCATTTTATAAAAGTGTTCAATAGAAATAT
TCTTCCAAAATTAAGACCATATTCTAACTGATTTCTCCCAGACTCATCAG
TATGAATAAGCAAAGAGCTCACTAAGACTCCCAAGTGTCAAAAAAAAAAA
AAGACTCCCAGGTGTCGGTTATAATTTCTGCTGCCAATAAAATGGAAGCA
GTTATTCTATGAAATAACTATAATTTAT

Query= MSMg01no271_h03.b1 MSMg01no271_h03.b1 CHROMAT_FILE:
MSMg01no271_h03.b1 PHD_FILE: MSMg01no271_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:19 2005
         (308 letters)



>mm_chr2_137547714_137548421
          Length = 708

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccggaatgctgagataatgcctgaacttgctgagccctcctgcctcctgccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccggaatgctgagataatgcctgaacttgctgagccctcctgcctcctgccac 264

                                                                       
Query: 65  ctccatcaagttctatctttgtcttaggccctgagtcatgccctacaccgacccctcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccatcaagttctatctttgtcttaggccctgagtcatgccctacaccgacccctcagt 324

                                                                       
Query: 125 catctgtgactcatagcagagagcagttatacccaatgctgagccacaggagcagacgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catctgtgactcatagcagagagcagttatacccaatgctgagccacaggagcagacgat 384

                                                                       
Query: 185 tattctattcttctttattctctcattctctctcttcttcttcttcttcttcttcttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattctattcttctttattctctcattctctctcttcttcttcttcttcttcttcttctt 444

                                                                       
Query: 245 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 304
           |||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 445 cttcttcttcttcttcttcttcttcttcttcttcgtcgtcgtcgtcttcttcttcttctt 504

               
Query: 305 ctct 308
           ||||
Sbjct: 505 ctct 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_h03.g1 MSMg01no271_h03.g1 CHROMAT_FILE:
MSMg01no271_h03.g1 PHD_FILE: MSMg01no271_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:19 2005
         (286 letters)



>mm_chr2_137700079_137700764
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcactttatctcattttggttataagctttatataagattcatatacccccttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtcactttatctcattttggttataagctttatataagattcatatacccccttttaaa 427

                                                                       
Query: 61  acataaaaatgtctttgatagatgaagaattaaaaaaggtgtgtgtgacccatagttaca 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acataaaaatgtccttgatagatgaagaattaaaaaaggtgtgtgtgacccatagttaca 367

                                                                       
Query: 121 ggaatggttccagaataacaaaaggctgtgatctttaagagttaaaaggctccaccttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaatggttccagaataacaaaaggctgtgatctttaagagttaaaaggctccaccttcc 307

                                                                       
Query: 181 tctgcctttcccctttccctccttagcctttatttactttcccttttcgcctaatctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctgcctttcccctttccctccttagcctttatttactttcccttttcgcctaatctttt 247

                                                         
Query: 241 aataatgtataccatgataacttaaccctccttggtgccagctaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aataatgtataccatgataacttaaccctccttggtgccagctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)