BAC Information

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BAC

Clone NameMSMg01-271K10
Chromosome2 (Build37)
Map Location 114,685,542 - 114,685,839
singlet/doubletsinglet
Overlap geneLOC100043222
Upstream geneArhgap11a, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219
Downstream geneLOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271K10.T7 (MSMg01no271_k10.b1)MSMg01-271K10.TJ (MSMg01no271_k10.g1)
ACCAG411142AG411143
length742749
length of high quality
(start - end)
313 (45 - 357)293 (68 - 360)
definitionCHROMAT_FILE: MSMg01no271_k10.b1 PHD_FILE: MSMg01no271_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:34 2005CHROMAT_FILE: MSMg01no271_k10.g1 PHD_FILE: MSMg01no271_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTGTGTAGATGTACCACATTTTCTTTATCCATTCCTAAGTTGAG
GGACACTGAGGTTGTTTCCGGATTCTGGTTATTATGAAAAAGCCTGCTAT
AAACATAGCTGAGCAAATGTTTCTGTGATATAGTAGGGCATCTTTTGGGT
ATATGACCAGGAGTGGTATAGCTGTGTATTGCGGTAGAACTTTTCCCAGT
TGTCTGAGAAACTGCCAAAATGATTTCCAAAGTGGTTGTACAAGTTTGCA
CTCCCAGCAGCAATGGAGGAATGTTCTTCTTGCTTAACATCCTTGCCAGC
ATGGACTATCATTTCACTTTGCGATTTTAGCTATTCTGACTAGTGTAAAA
TGGAATCTCCAAGTTGTTTTGATTTTCATTTACCTGATGACTAAGGACTT
TGAATAGCAGGACATTTCTTTAAGTGATTCTCAGCCATTCATGATTCCTC
TGTTGAGAATTCTCTGTTTAGCTCTGTACTTCATTTTTAAGTGGGTTATT
TGGGTTGTTGGTATTTAATTTCTTGAGTGCTTTATAGATTCTGGATAGGA
ACCCTCTGTCAGATGTAGAGTTGGTGAAGATCCTTTCCCAATCTGTAGGC
TACTGTTTTGTCCTATTAACAATATGCTTTGCTTTACAGAATCTTTTCAG
CTTCATGGGGTCCCAATTATCAATTGTTGATCTTAGAGCCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGTGCTGCTGGACATGACCTGTTAAGGAGAA
AGAAAGTTTAACCTGCCTACTGGCTTATGTGACCTCCTCTGGTGAGGCAA
AGGTGCCATTACTGGGTTGGGCACAGGACAGTGAGAAAATGAGCCTACTC
CTGAAGATATTAGGACAAGATTTCAGGATTTAGACATGCCTTGACCCCAC
TGTTTCTCCAGCCCTGCTTTCCTGGGTCCCATGGCTGGCTGGTCCCTCAA
CCAAAGTACCAAGTCACAGATCCTGTCCTGAGAAGCTAACGGAGACTACG
TACACTATGAAGACTGAGCTAAAATTCCTCATGCTGAGCTTCATAAGAGA
CATGGCTTGCGCTTGGATAAGTACGGGGGGCAGTGTTTTCCCTCACATAA
CAAGAAGACTTTGTGTGTGATGATACTTCACGAACATTCTGAGGATCATA
AGATTTCTTAGCCCAGTCTGAAAGACACTCTCTGGGAAATTTCATGACAG
TTATGCAGATGGTGATCCTAACATTATACAAATTTCATAAGTCACACACA
ACTTCTTGATGGTTAGACTTTACCCAGGTGTCTAATTTGTTAGCTCTAAA
CATTGCATCTTAGACCTTCTAAAGATGCTTCACATGCTTTCTTATGGTTA
CCAAGAGTTTTACAAACCCGATAAGCTTACCGAGTTTGTTTTGAGAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_k10.g1 MSMg01no271_k10.g1 CHROMAT_FILE:
MSMg01no271_k10.g1 PHD_FILE: MSMg01no271_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:34 2005
         (293 letters)



>mm_chr2_114685342_114686039
          Length = 698

 Score =  545 bits (282), Expect = e-160
 Identities = 292/298 (97%), Gaps = 5/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgctgctggacatgacctgttaaggagaaagaaagtttaacctgcctactggctta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caggtgctgctggacatgacctgttaaggagaaagaaagtttaacctggctactggctta 260

                                                                       
Query: 61  tgtgacctcctctggtgaggcaaaggtgccattactgggttgggcacaggacagtgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgacctcctctggtgaggcaaaggtgccattactgggttgggcacaggacagtgagaa 320

                                                                       
Query: 121 aatgagcctactcctgaagatat-----taggacaagatttcaggatttagacatgcctt 175
           |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||
Sbjct: 321 aatgagcctactcctgaagatatgatattaggacaagatttcaggatttagacatgcctt 380

                                                                       
Query: 176 gaccccactgtttctccagccctgctttcctgggtcccatggctggctggtccctcaacc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccccactgtttctccagccctgctttcctgggtcccatggctggctggtccctcaacc 440

                                                                     
Query: 236 aaagtaccaagtcacagatcctgtcctgagaagctaacggagactacgtacactatga 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtaccaagtcacagatcctgtcctgagaagctaacggagactacgtacactatga 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 698
Length adjustment: 9
Effective length of query: 284
Effective length of database: 689
Effective search space:   195676
Effective search space used:   195676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)