BAC Information

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BAC

Clone NameMSMg01-272A07
Chromosome2 (Build37)
Map Location 156,314,910 - 156,504,942
singlet/doubletdoublet
Overlap geneEpb4.1l1, 0610011L14Rik, Dlgap4
Upstream geneGgtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941
Downstream geneMyl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272A07.T7 (MSMg01no272_a07.b1)MSMg01-272A07.TJ (MSMg01no272_a07.g1)
ACCAG411412AG411413
length762719
length of high quality
(start - end)		251 (45 - 295)242 (59 - 300)
definitionCHROMAT_FILE: MSMg01no272_a07.b1 PHD_FILE: MSMg01no272_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:02 2005CHROMAT_FILE: MSMg01no272_a07.g1 PHD_FILE: MSMg01no272_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,504,691 - 156,504,942)(156,314,910 - 156,315,152)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTACTCCTTACCATAGCACCCCAAGGATCCCAGTGGAGTCAGACT
GCCCACCAGAAGGGCGAGCGAGGCGTAAACAGCCAGGGAGCGCTGCCCAT
CGGGAAGAGCCCCTGCTTCAGCTGCCCTTCCACTCGGTAGATGGGAACGG
TGCAATATGGCGAAATGCAAAGATAACTAATTGATTATGATTGATGCATC
CTTGAGCTAGCCAGTCTTGGGCTCAGGAGAGTTCCACGCAGACCACGTGT
TTTTCCTCTCTTTCTCCTGGCTACTTTCTTCCTTCTGCTGGNCTGTGCTG
ATGGCTCCTGGTTATGTATGCCACGCCCCAGCTTCTATCTTTACCTGAAA
AGGATTCCCCCCCGGACCCGGGCCCAAAAAGAAACTTTCCTTTAAACCCA
AGCCGGGGCCCCTCCCCCAAACAGGTTGTGAAAAGGGGACCCCCAGGGGG
GGGGCCCCCCCCGCAGAAAAAAATTTGGTTTCCCAAAATCCCCCCCCCCT
TGGAAAAAAAAAGACGCGGGGGTTTGAAANCGGGGACCTCTCCCCCCCNG
NCTCCCCCCCCCCCTCTTTTCTCCCNNNTTTCCCCCCTCCTCCTCCCCCT
NTTTTTCCAGAGGGGGGGGGNTNNNNCCCTTGTGTTATAGAGGGGAAACC
TTCCGAGGGGCGGTTNNTATAGGGAGNNNNNNNNNNNNCNNTNNCTTNTC
CCGCCGCTTGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAA
ATACAGGACGCCTGGTCTACAAAGCAAGTTGTGGGCCAACCAGATGTAGA
ACCCATGGAGGTGGAGCAGAAAAGGAGAAGGAATAAAACAGAGGGAAACC
CAGGAGGATCCGCGTCCTTTATCACCAGCCCGTGGCATGGCGGCATGTCC
TTGGGACGGCGGGGGAAGAAGATCACTTGAGGTCTTTGTTTGACTCAAGC
CTGTCCTGTTCTGATACTTGGAGATAACGTAGCTGATACTCTGCTAAGAT
GGCTCGTGTAGATACCACTTGACTTTCCAGGATGTGGTGTCTTGTTTTCC
CCGCCCCCCCCACGCTGAAATGAATGCATGCTTCATTATTGCCATTTTAT
TAAAAATAACATATAGACAGTCGGGACTTCCCAAAGAGACACAGTGGAAG
CACAGAACTATAAGTAAGAAATCCTATTCTCAGAGAGCACGGCAAAGGAT
GCTGGGTTGTATTCTTGAGTATATTTGTTTTAAGAGCTAGGAACTACCAA
GGACCTTGGCGCGAAAGTGAACCAGTCTGATTTGGTGTGGAGATTGCTCT
GCTACTCCGGAAGAAAATAACAATCCCCAAATATCGCACTGTTATTTTTT
ATCCCCAGACGCGTTGTGCCCGAGCTTTCAACATAGAAGCCCCAGGATTT
TAACTACGTTTATTTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_a07.b1 MSMg01no272_a07.b1 CHROMAT_FILE:
MSMg01no272_a07.b1 PHD_FILE: MSMg01no272_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:02 2005
         (251 letters)



>mm_chr2_156504464_156505114
          Length = 651

 Score =  397 bits (205), Expect = e-115
 Identities = 239/255 (93%), Gaps = 11/255 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctactccttac----catagcac---cc-caaggatcccagtggagtcagact 56
           ||||||||||||||   |    ||||||||   || ||||||||||||||||||||||||
Sbjct: 479 gaattccctactcc---caaagcatagcacacaccgcaaggatcccagtggagtcagact 423

                                                                       
Query: 57  gcccaccagaagggcgagcgaggcgtaaacagccagggagcgctgcccatcgggaagagc 116
           |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||
Sbjct: 422 gcccaccagaagggcgagcgaggcgtaaacagccagggagcgctgcccttccagaagagc 363

                                                                       
Query: 117 ccctgcttcagctgcccttccactcggtagatgggaacggtgcaatatggcgaaatgcaa 176
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 362 ccctgcttcagctgcccttccactcggtagatgggaacagtgcaatatggtgaaatgcaa 303

                                                                       
Query: 177 agataactaattgattatgattgatgcatccttgagctagccagtcttgggctcaggaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agataactaattgattatgattgatgcatccttgagctagccagtcttgggctcaggaga 243

                          
Query: 237 gttccacgcagacca 251
           |||||||||||||||
Sbjct: 242 gttccacgcagacca 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no272_a07.g1 MSMg01no272_a07.g1 CHROMAT_FILE:
MSMg01no272_a07.g1 PHD_FILE: MSMg01no272_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:02 2005
         (242 letters)



>mm_chr2_156314709_156315352
          Length = 644

 Score =  410 bits (212), Expect = e-119
 Identities = 235/248 (94%), Gaps = 12/248 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcctggtctacaaagcaagttgtgggccaaccagatgtagaaccc----atggaggtgga 57
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 202 gcctggtctacaaagcaagttgtgggccaaccagatgtagaa---ggagatggaggtgga 258

                                                                       
Query: 58  gcagaaaaggagaaggaataaaacagagggaaacccaggaggatccgcgtcctttatcac 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcagaaaaggagaaggaataaaacagagggaaacccaggaggatccgcgtcctttatcac 318

                                                                       
Query: 118 cagcccgtggcatggcggcatgtccttgggacggcgggggaagaagatcacttgaggtc- 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 319 cagcccgtggcatggcggcatgtccttgggacggcgggggaagaagatcacttgaggcca 378

                                                                       
Query: 177 --tttgtttgactcaagcctgtcctgttctgatacttggagataacgtagctgatactct 234
             |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggt--gtttgactcaagcctgtcctgttctgatacttggagataacgtagctgatactct 436

                   
Query: 235 gctaagat 242
           ||||||||
Sbjct: 437 gctaagat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 644
Length adjustment: 9
Effective length of query: 233
Effective length of database: 635
Effective search space:   147955
Effective search space used:   147955
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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