BAC Information

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BAC

Clone NameMSMg01-272C10
Chromosome2 (Build37)
Map Location 141,689,019 - 141,689,303
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272C10.T7 (MSMg01no272_c10.b1)MSMg01-272C10.TJ (MSMg01no272_c10.g1)
ACCAG411514AG411515
length834742
length of high quality
(start - end)
---286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no272_c10.b1 PHD_FILE: MSMg01no272_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:13 2005CHROMAT_FILE: MSMg01no272_c10.g1 PHD_FILE: MSMg01no272_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXATATCGAGAGCAACCGCGGAA
TTCACAATGTTACACAAATTCCTCCTGTCCCTGGTGCAGAGCCAGCAGGG
GTGTGGGCTTCTATGAATGTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTATGTGTGTGTTTTTTTCCTNTTCACAACTATTTATCAAACCAAAAAAA
CCCCACACAAACCCACATCCCAAATATACCCTCATACCTCCCCTCCACCC
CTATTTTCTCTTAAACCTTAACCGCCAATCACCCCCCACTAAACCACAAA
CCCACCCCACCCCAACCCCACTTTTTTTTTACACCTACCTCCACCCACAA
ACCCCACCAATTTAAAATGAGATCCCCCAAACAAAAACCCCCAATGATAT
ATATAAAAAATGTTTTTTCCTGTTCCCCCCCCAAAAAAATTATCAAAAAA
AATTCCCCTCCGCCCCCTCCTAATACACCCCCCAACACACATCCAACTAT
TCACCCACCCCCCCCAACCCACTCCCCCACCCAAACACCCAAACCCACCA
CCTCTTCACAACATTCCCATTCACCACATACCCCCTAACCCACAACACCA
CAACACCCCACCCCCCCCCACCCAAATAAACCCAACACACACCACCCAAC
AAACCACCAATTCCACACACATAAACCACCAACACAACCCACCCTAACCC
TACATTCAACCAAAAACCCCCCACCCCTTTATCTCCTACCACCAAAACAA
TTCCCCACCACACCCCTCCCCTTATATATCACACAAACCCCACCCACACA
ATACAAAATATCACACCCCACCAACAAATTACCN
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGCACTCCTCCTTCCTCAGTCT
GTCAGTGAGGGAATCACCATCCTGTATTGCCTAAAGCATGCCAAATCAAA
GTAGATCTTTGGTTGTACAGTGTCAGTTGCTGGGGCTTGAGCCTGGGGAA
GATTCTAGGTCTTGAATTTATTTCCACAGCAAGCTGTCAAGATGGCTGAC
AGATGAGATAACTGTTACCTCTCTGGCTTGTTAATTAAAGAAGATGGGGA
GTTATAGGGACATTAATTTCATTCTCTCACTGGAATCTTCTATGGAAAAA
GGAATTCCTTCATAATTCNTTACCAGATCAATGCCCTGCTTGACACGTAC
CTAAGTGACTATGAAAACATATGCCTTCAGAAAGAATGGTGTATGAATCG
GATGTCAGGCTCCATACGGTAAAATAGTGATATTACCTTTTAATTGCTCT
GGGAGATGGAAAAGCCATCTACAGAGAGAGAACAACAACATCTAAAGCCC
CAGCATCAAAAGGAATCAGATTTCAAAACACAAGGGAGCCAAAGGGAAGA
TCAAACATGCCTCTCCCTCATTCACCTTTGCTCTGATGTGCTTTGAGTGT
CCATTTCAATATTTCTAACACTTCCTTTTAACTCAACCTGAATTCTTCCT
TTTATTCTTTGGAGGTTCCCTGCAGTTGTTGAATATAAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_c10.g1 MSMg01no272_c10.g1 CHROMAT_FILE:
MSMg01no272_c10.g1 PHD_FILE: MSMg01no272_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:13 2005
         (286 letters)



>mm_chr2_141688819_141689503
          Length = 685

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcactcctccttcctcagtctgtcagtgagggaatcaccatcctgtattgcctaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 485 acagcactcctccttcctcagtctgtcagtgagggaatcaccatcctgtattgcc-caag 427

                                                                       
Query: 61  catgccaaatcaaagtagatctttggttgtacagtgtcagttgctggggcttgagcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 426 catgccaaatcaaagtagatctttggttgtacagtgtcagttgctggggcttgagcctga 367

                                                                       
Query: 121 ggaagattctaggtcttgaatttatttccacagcaagctgtcaagatggctgacagatga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattctaggttttgaatttatttccacagcaagctgtcaagatggctgacagatga 307

                                                                       
Query: 181 gataactgttacctctctggcttgttaattaaagaagatggggagttatagggacattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 306 gataactgttacctctctggcttgttaattaaagaagatggggagttatagggacattac 247

                                                         
Query: 241 tttcattctctcactggaatcttctatggaaaaaggaattccttca 286
           |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 246 tttcattcactcactggaatcttctctggaaaaaggaattccttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)