BAC Information

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BAC

Clone NameMSMg01-272K22
Chromosome2 (Build37)
Map Location 120,015,739 - 120,156,486
singlet/doubletdoublet
Overlap genePla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Upstream geneDnajc17, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4
Downstream geneTmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272K22.T7 (MSMg01no272_k22.b1)MSMg01-272K22.TJ (MSMg01no272_k22.g1)
ACCAG411899AG411900
length756770
length of high quality
(start - end)
320 (46 - 365)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no272_k22.b1 PHD_FILE: MSMg01no272_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:53 2005CHROMAT_FILE: MSMg01no272_k22.g1 PHD_FILE: MSMg01no272_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,156,172 - 120,156,486)(120,015,739 - 120,016,032)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGCAAGTCTAACACATAGTTTGAGACCCTATCTCAACAACCAA
ACAAACGTAAGAAAGAAGAGGTGCACTGGGCCCTGAAGAGTGAGAAGGAA
ACTGGAATGTGAAGGAACCATGGGGGCACAGCCCCAACCTGTGTCCACTT
TCCTGTGAGCCCAGTGCACCATTTGGTGGTGTGTGGTAGATCATGCCAGA
AAGATACGTTGGAGCTAGATTTCAAAGAACCTTGAAGGTCACAAAGGAGC
TTAGCGTTTGATAGACAAAAGGTGACATTGCAAGGCCTTTTGGTTTTGCA
GTGGTAGAATTGGATTTCTGTTACTTCGCCCCCCTCACCTGCCCCCCATC
ACGGGCAGCCTCCTATCACAGGCGTTCAGAAGAATGACAAAGAACATGGC
TGTAGGTGCAGGAGACAGATAGATGGAGGCCGCGTGCTCACTTACACTTC
CTCACAGCTGCTTTGGTGGGGCTCCGTGCAGCTCTGCCAGCTGCTATGTT
CAGTTGCACATTCTTGTCAGTGCTCTACCAGATTCCTGATCCTAAGGAAC
AGGGTCTTCTTAGATGGGTCAGATACTGTGACATGGGGCCAACTGGGTTC
TGGGAGCCTCACGGAAGACTTGTGCCCATTAAGGGGGAACTGGTTTTCCC
CACTCTGACTTCTCTCTGCTCCGCTCTGCCCACCCTTCACTCTCTTCAAA
TNTTTG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTCTCTGACCCCTAGTAAGGTCTCC
TGTGTGGTCCTGTAGCAGTTCTTCAAGTGACAAGTGGCCTGTCCTCAATG
GCCTAGGTGGCATGGACGAGTTTATAAGGTTCCCAGCCTCTGATCCTGAA
AGGTTTGACTCAAGGAAAGTGTTACCTCCTAGATTTCTATCTAGTGGACA
TAAACGTGGCTTTGGGCATCTACAACTATGTAAGATTTTGTAATTTCTAG
AAATTTGGACCAGAACAACCTGACAACTACAAAACAAAAAGAAAGCTCAA
AATACTGATTTCAAGATTTTACACTACATCCACACGGAAATAGTCCTCCC
CTACAAAACTCATACACATGATAAAAGGGATGACATTGTATTTTAGCTTA
TTAACACTGGTTTTCACTGTGTAGCCCAGGTCCACTTCAAATTTGCAATC
CTCCTATCTCAGTCTCCTGATGACAGGTGTGAGCCACCACAACTGGTGCA
AAGGTTGTTGTGGTGGCAGTTGCTATTGGTTGTGTTTTTTTAAACTATAA
TGATCACAACCCTTTTGAAAAATAAAAGACTCTTCATTAACTAGAATTCT
AAACAGTTATCTGGAGTGTCAAGCCTTGACTTTCTTGGGATTGATGCCTT
TATCAACAGGCCAAATTTGTCTCAAGGCTGCCACAACTCAAGATGCTTTA
GAGATGTAACTATGTAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_k22.b1 MSMg01no272_k22.b1 CHROMAT_FILE:
MSMg01no272_k22.b1 PHD_FILE: MSMg01no272_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:53 2005
         (320 letters)



>mm_chr2_120155968_120156687
          Length = 720

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggcaagtctaacacatagtttgagaccctatctcaacaaccaaacaaacgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctaggcaagtctaacacatagtttgagaccctatctcaacaaccaaacaaacgta 460

                                                                       
Query: 65  agaaagaagaggtgcactgggccctgaagagtgagaaggaaactggaatgtgaaggaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agaaagaagaggtgcactgggccctgaagagtgagaaggaaactggaatgtgaaggaacc 400

                                                                       
Query: 125 atgggggcacagccccaacctgtgtccactttcctgtgagcccagtgcaccatttggtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgggggcacagccccaacctgtgtccactttcctgtgagcccagtgcaccatttggtgg 340

                                                                       
Query: 185 tgtgtggtagatcatgccagaaagatacgttggagctagatttcaaagaaccttgaaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtgtggtagatcatgccagaaagatacgttggagctagatttcaaagaaccttgaaggt 280

                                                                       
Query: 245 cacaaaggagcttagcgtttgatagacaaaaggtgacattgcaaggccttttggttttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cacaaaggagcttagcgtttgatagacaaaaggtgacattgcaaggccttttggttttgc 220

                          
Query: 305 agtggtagaattgga 319
           |||||||||||||||
Sbjct: 219 agtggtagaattgga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no272_k22.g1 MSMg01no272_k22.g1 CHROMAT_FILE:
MSMg01no272_k22.g1 PHD_FILE: MSMg01no272_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:54 2005
         (294 letters)



>mm_chr2_120015539_120016232
          Length = 694

 Score =  569 bits (294), Expect = e-167
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttctctgacccctagtaaggtctcctgtgtggtcctgtagcagttcttcaagtgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttctctgacccctagtaaggtctcctgtgtggtcctgtagcagttcttcaagtgacaa 260

                                                                       
Query: 61  gtggcctgtcctcaatggcctaggtggcatggacgagtttataaggttcccagcctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggcctgtcctcaatggcctaggtggcatggacgagtttataaggttcccagcctctga 320

                                                                       
Query: 121 tcctgaaaggtttgactcaaggaaagtgttacctcctagatttctatctagtggacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgaaaggtttgactcaaggaaagtgttacctcctagatttctatctagtggacataa 380

                                                                       
Query: 181 acgtggctttgggcatctacaactatgtaagattttgtaatttctagaaatttggaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtggctttgggcatctacaactatgtaagattttgtaatttctagaaatttggaccag 440

                                                                 
Query: 241 aacaacctgacaactacaaaacaaaaagaaagctcaaaatactgatttcaagat 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaacctgacaactacaaaacaaaaagaaagctcaaaatactgatttcaagat 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)