BAC Information

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BAC

Clone NameMSMg01-273B24
Chromosome2 (Build37)
Map Location 35,426,273 - 35,589,743
singlet/doubletdoublet
Overlap geneDab2ip
Upstream geneMapkap1, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273B24.T7 (MSMg01no273_b24.b1)MSMg01-273B24.TJ (MSMg01no273_b24.g1)
ACCAG412214AG412215
length725729
length of high quality
(start - end)
296 (69 - 364)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no273_b24.b1 PHD_FILE: MSMg01no273_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:26 2005CHROMAT_FILE: MSMg01no273_b24.g1 PHD_FILE: MSMg01no273_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,589,452 - 35,589,743)(35,426,273 - 35,426,563)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCAGACATTTTCCTATAGCCATAGCTCAGGATTTCGGTGTGCCGCGGAC
CAGCAGACAACCCACCTTGGCCACAGGTCTGGTAACTACTCAATCCGGAC
GGTGTGATGCTCACTGGGTTGGTCAGGTTTGAGAAGCCCTGTATGCCCAC
CTCTCTCCCGCCGACACCAACCACGCCTTCCCTCCTGCCAGCTGCTGGGG
AAAGCAGCATCTGTCTTGTATCTTTATTTTGTATTCAGCCACTTCCCTAT
GCAAAGACCATTTGGGGGATGTTTAATTTTAAGAAAATCCCATTTTGTTT
TGTTTTCTTGTCTTGTTCCTCCCCCCCACAATGAGCTTCTTTTTTGCCGT
TTCTTCACCACCTCTTACTTCCTTCAACATTAAAGAAGTGATGGGGGGGG
GGGGTCTAATGCTTCGCTTTTAGAGATTGTACTGACTTTTTTCAGTGCAA
GGCAAGCCCTCTACCACTGAGCTCCAGGTATTTTTTAATTGTGTTTTCAT
CATAAACACAAAAACATGTTCAGGGATACATATGTAGAGCGCATATGTAA
GCCAAGAGGACCACACTCAGCATCCCTAGGTCAGCATCTGATCCACATCT
TGGCTTTTCTCTCTTTGATGATCCAAATGTGAATTTTAGGTTTATTGGGA
AATTATTCTCCCTATAGATCTATTT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGCCACAAATTCAATAAGAAAGCCTAA
TCCTGCTGTTCCTGTAGAGATGCCAAGGCAAAGCCTACAGAGACCTGGGT
GTGGCCTCAGTCCCCAGGGAGAATGGTGACAAGCCAGTCCACCTCCTGAC
CCTTCCTGTGGAACCAGGCCACCCTCTGCCGGAAGGATAGTGTTGGACAA
ATAAGCATCTCAAAGTAGGTTTTGTTAGCGCGCAGAATGACAACAGGAGA
CACTGGCTTCTGAATGGGAAGTGTTTGCAGGGAGGAGGCTCTGCACAGAA
GCTGCAAGCAAATTTTTTATTTCGNAGCTGGGCACGCCTCATTGAGAGCC
TGGTACCCAGCCAAGGCTGCACTGGGTTTAGAAATAGACTCGTGGTTCCG
TTCCTGACTTTTCTATCTCCTCACTACATCTACTTTGGCCAAACAGACCT
CTTCTGAAAAAAGAAAAAACAGTAGCAATCACTTCTGGTTGATTATAAGG
GGTTAAAGTGACTGAACGCTTCAAGATTCTTTCCCCTCCTCTTCTCTCCT
TTCTCCTCCTCCTCCTCTTCCTCCTTTTCTTTCATAATGAGACAGGGTCT
CTTTCTAAAGCCCTGACTGGCCTGNAACGCAGTGTAAACCAGGCTGGCCT
TGAACTCTGTCTGCTATGTCTTCCTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_b24.b1 MSMg01no273_b24.b1 CHROMAT_FILE:
MSMg01no273_b24.b1 PHD_FILE: MSMg01no273_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:26 2005
         (296 letters)



>mm_chr2_35589252_35589947
          Length = 696

 Score =  495 bits (256), Expect = e-144
 Identities = 283/292 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccatagctcaggatttcggtgtgccgcggaccagcagacaacccaccttggccacaggt 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 492 gccatagctcaggatttcggtgtgccgcagaccagcagacaacccaccttggtcacaggt 433

                                                                       
Query: 61  ctggtaactactcaatccggacggtgtgatgctcactgggttggtcaggtttgagaagcc 120
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctggtaactactcaatccagacagtgtgatgctcactgggttggtcaggtttgagaagcc 373

                                                                       
Query: 121 ctgtatgcccacctctctcccgccgacaccaaccacgccttccctcctgccagctgctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctgtatgcccacctctctcccgccgacaccaaccacgccttccctcctgccagctgctgg 313

                                                                       
Query: 181 ggaaagcagcatctgtcttgtatctttattttgtattcagccacttccctatgcaaagac 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 312 ggaaagcagcatctgtcttgtatctttattttgtattctgccacttccctaagcaaagac 253

                                                               
Query: 241 catttgggggatgtttaattttaagaaaatcccattttgttttgttttcttg 292
           |||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 252 catttgggggatgggaaattttaagaaaatcccattttgttttgttttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no273_b24.g1 MSMg01no273_b24.g1 CHROMAT_FILE:
MSMg01no273_b24.g1 PHD_FILE: MSMg01no273_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:26 2005
         (291 letters)



>mm_chr2_35426073_35426763
          Length = 691

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccacaaattcaataagaaagcctaatcctgctgttcctgtagagatgccaaggcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 caggccacaaattcaataagaaagcctaatcctgctgttcctgtagagatggaaaggcaa 260

                                                                       
Query: 61  agcctacagagacctgggtgtggcctcagtccccagggagaatggtgacaagccagtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctacagagacctgggtgtggcctcagtccccagggagaatggtgacaagccagtcca 320

                                                                       
Query: 121 cctcctgacccttcctgtggaaccaggccaccctctgccggaaggatagtgttggacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcctgacccttcctgtggaaccaggccaccctctgccggaaggatagtgttggacaaa 380

                                                                       
Query: 181 taagcatctcaaagtaggttttgttagcgcgcagaatgacaacaggagacactggcttct 240
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 381 taagcatctcaaagtaggttttgttagcacgcaggatgacaacaggagacactggcttct 440

                                                              
Query: 241 gaatgggaagtgtttgcagggaggaggctctgcacagaagctgcaagcaaa 291
           ||||||||||||  ||||||||||||||||||  |||||||||||||||||
Sbjct: 441 gaatgggaagtgggtgcagggaggaggctctgtgcagaagctgcaagcaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)