BAC Information

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BAC

Clone NameMSMg01-273D17
Chromosome2 (Build37)
Map Location 130,351,667 - 130,351,804
singlet/doubletsinglet
Overlap genePtpra
Upstream geneF830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
Downstream geneMrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273D17.T7 (MSMg01no273_d17.b1)MSMg01-273D17.TJ (MSMg01no273_d17.g1)
ACCAG412292AG412293
length729745
length of high quality
(start - end)
296 (68 - 363)138 (72 - 209)
definitionCHROMAT_FILE: MSMg01no273_d17.b1 PHD_FILE: MSMg01no273_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005CHROMAT_FILE: MSMg01no273_d17.g1 PHD_FILE: MSMg01no273_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTTAATTTCCGCAAACTAGGTGATCATTTCAACAAAAGCAGGAAA
AGCACTTGTCTAAACTAATACCGCAATATGAAAATTTCCAGCAAACTAGT
CATGTGGTGGCACGTGACTTTAATCCCGGTACTCTGGAGGGAGAGACAGT
TGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGGGTGAGTTCTCTG
AACAGTCAGGGCTACACAGAGAAACCTTGTCTCAAAACAAAATAAAACCA
ACAAAATCTAACAACTAACGATTTTCTGAAGCCTTGAAACCTTAAAGTCA
AGACAAGCTCTGTTTATTCATCACCCCCCCCCCCGCCATGAGCTGTGAAG
TGTATCCCCTCTTCAGAGTAGAGAAGTTTTCAATCGTCCCTTAACCCCTA
CTTGGTATTGGCATAGTAAATAAACAAACAAACAAACAAATAAATAAATA
AATACAAACACAAATAAATAAAATAAATATGCTTAATAATAGAAGAAAGA
AAATGATAGCCACTTTCATATAACGTAATAATCTGTAAGGAAATCTTTCT
TTAAAAAGCTTTGGGGGAAGTGAAAACACGATCCAGTGATTTGCAGCACC
AGCTGCTCTCGAAGAAGACCCTTATTCAGTCCCCAGCACCCACATGGCAG
TTCACAACCACCTGTAACTCTAGTTCCAG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGGCAACTCCTTCCTCCCAAGTGCAGT
AGTGCACCCACCCAAGCATCATCACAGCCAATCAGCTTTATTCCTCAGAT
TAAACTCACTACCACTTACGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGGAAAAATCTTATTTATTTTGAGTATTTCCACATTTCCGTTG
TCCACCCTTGATCCCCTTTTTTTTCGAGCATTTTTGCCATCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_d17.g1 MSMg01no273_d17.g1 CHROMAT_FILE:
MSMg01no273_d17.g1 PHD_FILE: MSMg01no273_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:34 2005
         (138 letters)



>mm_chr2_130351505_130352042
          Length = 538

 Score =  236 bits (122), Expect = 4e-67
 Identities = 134/138 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggcaactccttcctcccaagtgcagtagtgcacccacccaagcatcatcacagccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaaggcaactccttcctcccaagtgcagtagtgcacccacccaagcatcatcacagccaa 241

                                                                       
Query: 61  tcagctttattcctcagattaaactcactaccacttacgaagaagaaggaggaggaggag 120
           | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 240 ttagctttattcctcagattaaactcactaccacctacgaagaagaaggaggaggaagag 181

                             
Query: 121 gaggaggaggaggaggag 138
           ||||| ||||||||||||
Sbjct: 180 gaggacgaggaggaggag 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)