BAC Information

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BAC

Clone NameMSMg01-273D21
Chromosome2 (Build37)
Map Location 77,019,427 - 77,171,155
singlet/doubletdoublet
Overlap geneSestd1, LOC623706
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
Downstream geneLOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273D21.T7 (MSMg01no273_d21.b1)MSMg01-273D21.TJ (MSMg01no273_d21.g1)
ACCAG412300AG412301
length722723
length of high quality
(start - end)
273 (389 - 661)330 (376 - 705)
definitionCHROMAT_FILE: MSMg01no273_d21.b1 PHD_FILE: MSMg01no273_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005CHROMAT_FILE: MSMg01no273_d21.g1 PHD_FILE: MSMg01no273_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,019,427 - 77,019,699)(77,170,837 - 77,171,155)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAAATCCGCGGA
ATTCTAAAATTTTATGCCTGGAAAACCGCTTGGGGGAGCTGTTTTGTGAC
AGACAGCATCCCTCCCCTCAAATACCAACTACCACATTCAAATGTGAGCG
ATATAATTTCTACCCCCAACTTCTCTTACTATTTCAACATGAGAATCAGA
AAAAATTGTTTACAACTTTTTACACACCCAAAATATAAAAATCAGGGCAC
AGAACAACCACACTGGGAAAAAGAGTGATAGTTTCCTTTTAAAAACCACC
TTGCGAGCCAGCAATTCTAAGTATTTACTCTCGAGCACGTGAATAACTAT
ATTCATATGTATGCTCTTATTTATGACCACCGCCCCTTTGTTCATAGTTG
ACAGTCCTGCAAACAGCCCAGTTAGCCAATAGGAAACTGAGAAAACAAGT
GGCAATATCCAATCATGGGGACACCACTTAGTAATAACATAAGGATGAAT
TAATAATACACCAAGTCCACAAATAAACCTCCCAAATACCATGGCAGTAA
AGAAGCCTTGATGTGTGATATGAATTAAAATAAGTTCTGAAATAGAACAA
TCTAACTCACAATAGAAAGGAAGAACAGGGCTTGTCATTTGGGGACAGTG
ATGAGTGAGAGGGGAGAACTTTCTAGAGTGGTAGATGTCCTTTTCTATAG
CACGCCACATAACTATGAAACA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCGAAATCAGTGATGAGAAGCTACAATTTGCTCATCC
TTCAACAGAATAGAAAATTGACGCGTTCTTATGAGGAATCTGCATGCTGT
CAGAGAATCCATTTTTCTCTCAGAGGTCACATCTCCAAAGAAAGTCTTCA
ATACTTGGCATCCCTCCTGCCTCTGATGCCCCTCATCTCCCTGACTCCTA
CTATATGACCCCTTTCCTTGAAGACTAGGCTTGTGTGTATTATATAGTTT
GTGTATGATGATAAAATTCTGACTTTTTGTAAGGTGATGAAATCCACAGT
CAGTGAAAACAAATTTTTTTCCCACCCCCCCCCACCGAAATGACTTGGAG
CCATTGTGTGATGGCATTGATCAGTGATTTATATTCATTATCATGTTCAT
TCTTCCTAAATTCTATAAGGTGTTATCACTCCCGGCCATGAAGAAGGAAG
CTGGAGAGAGTCTTAGAGCCGAGAGTCAGGAAGTTTTAAGTGGCTGACAG
AACCAAGATCTCCTCACATAAGGTGTCATGGAGTATAAAATGTAACAAAA
TTTAACACAACTGTACACTAAATGTAAGGTTTCAATTCAGAAAATCCCTA
AATAAGGAAAACATGAACCTTANACCCAAAAATGAGTCCATGGCTTATCC
TTTAGAACTGTTCTCTAACATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_d21.b1 MSMg01no273_d21.b1 CHROMAT_FILE:
MSMg01no273_d21.b1 PHD_FILE: MSMg01no273_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:34 2005
         (273 letters)



>mm_chr2_77019227_77019899
          Length = 673

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcatagttgacagtcctgcaaacagcccagttagccaataggaaactgagaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcatagttgacagtcctgcaaacagcccagttagccaataggaaactgagaaaacaa 260

                                                                       
Query: 61  gtggcaatatccaatcatggggacaccacttagtaataacataaggatgaattaataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggcaatatccaatcatggggacaccacttagtaataacataaggatgaattaataata 320

                                                                       
Query: 121 caccaagtccacaaataaacctcccaaataccatggcagtaaagaagccttgatgtgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccaagtccacaaataaacctcccaaataccatggcagtaaagaagccttgatgtgtga 380

                                                                       
Query: 181 tatgaattaaaataagttctgaaatagaacaatctaactcacaatagaaaggaagaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaattaaaataagttctgaaatagaacaatctaactcacaatagaaaggaagaacag 440

                                            
Query: 241 ggcttgtcatttggggacagtgatgagtgagag 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 ggcttgtcatttggggacagtgatgagtgagag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no273_d21.g1 MSMg01no273_d21.g1 CHROMAT_FILE:
MSMg01no273_d21.g1 PHD_FILE: MSMg01no273_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:35 2005
         (330 letters)



>mm_chr2_77170626_77171355
          Length = 730

 Score =  603 bits (312), Expect = e-177
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaaatgacttggagccattgtgtgatggcattgatcagtgatttatattcattatcatgt 71
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 530 gaaatgacttggagccattgtgtgatagcattgatcagtgatttatattcattatcatgt 471

                                                                       
Query: 72  tcattcttcctaaattctataaggtgttatcactcccggccatgaagaaggaagctggag 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tcattcttcctaaattctataaggtgttatcactcccggccatgaagaaggaagctggag 411

                                                                       
Query: 132 agagtcttagagccgagagtcaggaagttttaagtggctgacagaaccaagatctcctca 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agagtcttagagccgagagtcaggaagttttaagtggctgacagaaccaagatctcctca 351

                                                                       
Query: 192 cataaggtgtcatggagtataaaatgtaacaaaatttaacacaactgtacactaaatgta 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cataaggtgtcatggagtataaaatgtaacaaaatttaacacaactgtacactaaatgta 291

                                                                       
Query: 252 aggtttcaattcagaaaatccctaaataaggaaaacatgaaccttanacccaaaaatgag 311
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 290 aggtttcaattcagaaaatccctaaataaggaaaacatgaaccttaaacccaaaaatgag 231

                              
Query: 312 tccatggcttatcctttag 330
           |||||||||||||||||||
Sbjct: 230 tccatggcttatcctttag 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)