Query= MSMg01no274_c05.b1 MSMg01no274_c05.b1 CHROMAT_FILE:
MSMg01no274_c05.b1 PHD_FILE: MSMg01no274_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:38 2005
(356 letters)
>mm_chr2_74008489_74009244
Length = 756
Score = 627 bits (324), Expect = 0.0
Identities = 348/356 (97%)
Strand = Plus / Plus
Query: 1 gcatgaaaatgtgtcccgtcgtatgtgtggaggtcagaggttaggttgtaggaatcaggt 60
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 201 gcatgaaaatgtgtcccgtcgtatgtgtagaggtcagaggtcaggttgtaggaatcaggt 260
Query: 61 ccagaggtggactgcaggtcctcaggcatggtgacaggcacactgagcaatcttgccaac 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 261 ccagaggtggactgcaggtcctcaggcatggtgacagacacactgagcaatcttgccagc 320
Query: 121 cttcatagctggtccttatcgcctctctgagatggggcttagtgggcatgcgcagaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 321 cttcatagctggtccttatcgcctctctgagatggggcttagtgggcctgcgtagaagtg 380
Query: 181 gttttggcttcagctctgtttatgcaggctggtgaaagggcacaggagctgttcgttaaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 381 gttttggcttcagctctgtttatgcaggctggtgaaagggcgcaggagctgttggttaaa 440
Query: 241 gtgagtctcagactctggagagactgctagggctatgtgttttgcttggggtgttggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgagtctcagactctggagagactgctagggctatgtgttttgcttggggtgttggagg 500
Query: 301 atgtataacttgggggccagtgcttgttctgtggtagtcgagggtatgtttgtgag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtataacttgggggccagtgcttgttctgtggtagtcgagggtatgtttgtgag 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_c05.g1 MSMg01no274_c05.g1 CHROMAT_FILE:
MSMg01no274_c05.g1 PHD_FILE: MSMg01no274_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:38 2005
(654 letters)
>mm_chr2_74169715_74170768
Length = 1054
Score = 1007 bits (521), Expect = 0.0
Identities = 639/715 (89%), Gaps = 62/715 (8%)
Strand = Plus / Minus
Query: 1 ttccttttagaaaatcatgttgataattgcttatttgagttgccaagatgcaatgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttccttttagaaaatcatgttgataattgcttatttgagttgccaagatgcaatgtcttt 737
Query: 61 gtatcagtatgcttctgaagtggttacaaacatgataattctctctgtgattatgcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 736 gtatcagtatgcttctgaagtggttacaaacatgataattctctctgtgattatgaaaat 677
Query: 121 atttatgtgtgcatgggcaaac-------------------------------------- 142
||||||||||||||||| ||||
Sbjct: 676 atttatgtgtgcatgggaaaacatatatatatatatatatatatatatatatatatatat 617
Query: 143 atatatatatgtatatacatgagtgtagttatatatgtatttattggtttgcatttgtag 202
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 616 atatatatatatatatacatgagtgtagttatatatgtatttattggtttgcgtttgtag 557
Query: 203 tgtaaggactattattcaattatttaatgtagttgaaggacaaatattcaatatatgcct 262
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 556 tgtaaggactattattcaattatttaatgaagttgaaggacaaatattcaatatatgcct 497
Query: 263 ccagtgttctaaactatcttgaataataaggaagtactaaggttctgaccatagagtaaa 322
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 ccagtgttctaaactatcttgaataataaagaagtactaaggttctgaccatagagtaaa 437
Query: 323 attttatggtgagatgttatcacttttaactgcttaattcactatgtctttacatatata 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 436 attttatggtgagatgttatcacttttaactgcttaattcactatgtctttacatttata 377
Query: 383 tatat----atgtaa-atat---------------atatatattagtatatat--taata 420
||||| || ||| |||| |||||||||||||||||| |||||
Sbjct: 376 tatattaccat-taatatatttactactatcaataatatatattagtatatatattaata 318
Query: 421 ttgtatattttctttatttacatttcaagggttaccccc-ttttctgttttcccccactc 479
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 ttgtatattttctttatttccatttcaagggttaccccccttttctgttttcccccactc 258
Query: 480 ccagaaaccccctattccatactccctcccttgcttctatgagggtgttcctccacctat 539
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccagaaaccccctattccatcccccctcccttgcttctatgagggtgttcctccacctac 198
Query: 540 ccacccgctcctgtctccccacccttgattcccctacactggtgcatctacccagccttc 599
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 197 ccacccgctcctgtctccccacccttgattcccctacattggtgcatctatccagccttc 138
Query: 600 ataggaccaaggacctctcctcccattgatacctgacaaggtcatcctctgctac 654
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 137 ataggaccaaggacctctcctcccattgatacctgacaaggccatcctctgctac 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
