BAC Information

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BAC

Clone NameMSMg01-274D20
Chromosome2 (Build37)
Map Location 93,767,959 - 93,973,601
singlet/doubletdoublet
Overlap geneGm1335, LOC620695, Alkbh3, Hsd17b12
Upstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D20.T7 (MSMg01no274_d20.b1)MSMg01-274D20.TJ (MSMg01no274_d20.g1)
ACCAG413029AG413030
length737736
length of high quality
(start - end)
220 (432 - 651)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no274_d20.b1 PHD_FILE: MSMg01no274_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:45 2005CHROMAT_FILE: MSMg01no274_d20.g1 PHD_FILE: MSMg01no274_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,973,382 - 93,973,601)(93,767,959 - 93,768,248)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGACATTTTGTTCTTTAGATTGGTTTTTCTTAGTGTCTCAGCTTCCTATT
GCTGCATAACAAGTGGTCCCCAATATAGTGTTTAAAAACAATCACCTGTA
GTCTTACTTAGAATTTTATAGCTCATGAATTTGTGACTCAGGAGAAGACA
CTTTCCCTAGTCTCTTGGCTAGGATAGCCCCTCTTGGGCTGCAGACTCAT
GTTGGCATCAGCCCCATTAAAGGTGTTGTAACTAGTGAACTTGGAGCTGT
CTAGTTTCTTCTCATTTACTATGCCAGATAGCATCCTTATGCGGTATTGA
GACTCTTGTTATTGTTTGCCCCCCCCCCGTAAAGTATCTTAAGGTTTTGG
TTTTAGACGCTATAGCATAGATCTAGAAACATCTTTTTTTAGTTAGCTAA
AGTTCTTCTTTGACAGTTTCACATGTAGTTAATGCATTACCTGACTGTCT
CACCCACCATCCTCTTCTATCTCCCTACTGCCCATCTACCTGCTTCTATA
AATCTCTCTTACATTCATTTCTATTTGTTATGTTTTGAAATCCACTAAGT
TTAATCAGTGTCTGCTGAATGGGGCTGTCTTGTTGGAGTCTGGTGAGCTC
AGCAGCTGGAACACATGTGAAGACAAGATTCCCCCTCTCCCAAGAACCAA
ATTTGTTCATAGCCAAAATCTCGGCAGTAATGGTAGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCAGGTGCCACTCCTCCTTTTGTCATTT
CTGATCCTAGGATATCCATCTAAGATTATGCCGGTTCCTTTGGCCCGAGA
TTCCATTCCCTTTCATCCTTGAGTACAAGAGAGTGTTTGAAAGCTTCTAC
TTGATTCTTTCTATTCAGCCTTCTTATTATGAAAATTGTCCACATATACA
GAAGAAAACAAACTGAAAGAACACCCACACGCTGTATTCATTGGTTCCAG
CAACTACCTGAACTCAGGGTCAGTCAGCGCTGTTCTCCACCCCCACTGCT
GCATCCCCTCAAGTTGTTCTGNTNACCAAACCCCAAGCAGCCTTCCACTT
CACCTGCAAATGCTCTCTCTTTAAAAACAAAAACTCTGTCTTTAGGCAGA
ACTTCAGTGTCTACCAGGAAAGAAGAAACAACAGCAGTGACTCATTCCGG
CGTCACTAATCTCACCAGCATCCACGTTTCCCCAGTGCCGTTGCTTTTCT
TGGGACTTACTCGATTAAAGTGGGAAGGCTTTCTATACTGTTGCTGGCTA
ATCTATTGCTTACGTTTCTGTAGATTTTTCTCTTCCATTTCCCCCCTTTG
TATTTGTCGCTGTCATTTATTGAAGCAACAGCCAGGGTTGTGCTGATTGT
ACCCTGCTTGTGGTTTCATGCGCTCTTTAGTTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d20.b1 MSMg01no274_d20.b1 CHROMAT_FILE:
MSMg01no274_d20.b1 PHD_FILE: MSMg01no274_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:45 2005
         (220 letters)



>mm_chr2_93973182_93973801
          Length = 620

 Score =  426 bits (220), Expect = e-124
 Identities = 220/220 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttttttagttagctaaagttcttctttgacagtttcacatgtagttaatgcattacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tctttttttagttagctaaagttcttctttgacagtttcacatgtagttaatgcattacc 361

                                                                       
Query: 61  tgactgtctcacccaccatcctcttctatctccctactgcccatctacctgcttctataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgactgtctcacccaccatcctcttctatctccctactgcccatctacctgcttctataa 301

                                                                       
Query: 121 atctctcttacattcatttctatttgttatgttttgaaatccactaagtttaatcagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atctctcttacattcatttctatttgttatgttttgaaatccactaagtttaatcagtgt 241

                                                   
Query: 181 ctgctgaatggggctgtcttgttggagtctggtgagctca 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgctgaatggggctgtcttgttggagtctggtgagctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no274_d20.g1 MSMg01no274_d20.g1 CHROMAT_FILE:
MSMg01no274_d20.g1 PHD_FILE: MSMg01no274_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:45 2005
         (290 letters)



>mm_chr2_93767759_93768448
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaggtgccactcctccttttgtcatttctgatcctaggatatccatctaagattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaggtgccactcctccttttgtcatttctgatcctaggatatccatctaagattat 260

                                                                       
Query: 61  gccggttcctttggcccgagattccattccctttcatccttgagtacaagagagtgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccggttcctttggcccgagattccattccctttcatccttgagtacaagagagtgtttg 320

                                                                       
Query: 121 aaagcttctacttgattctttctattcagccttcttattatgaaaattgtccacatatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcttctacttgattctttctattcagccttcttattatgaaaattgtccacatatac 380

                                                                       
Query: 181 agaagaaaacaaactgaaagaacacccacacgctgtattcattggttccagcaactacct 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 agaagaaaacaaactgaaagaacacccacacgctgtattcattcgttccagcaactacct 440

                                                             
Query: 241 gaactcagggtcagtcagcgctgttctccacccccactgctgcatcccct 290
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gaactcagggtcagccagcgctgttctccacccccactgctgcatcccct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)