Query= MSMg01no274_k17.b1 MSMg01no274_k17.b1 CHROMAT_FILE:
MSMg01no274_k17.b1 PHD_FILE: MSMg01no274_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:15 2005
(722 letters)
>mm_chr2_124384948_124386069
Length = 1122
Score = 1313 bits (679), Expect = 0.0
Identities = 709/719 (98%)
Strand = Plus / Minus
Query: 4 ggaattcattattttataatttaatttgcatttatgttttgacatatcttggggacaaag 63
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct: 922 ggaattcattattttataatttaatttgcgtctatgttttgacataccttggggacaaag 863
Query: 64 gccacttctgacacctttcttgagtgtgtcatgttgccctttgtaaggttgcatagagac 123
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gccacttctgacagttttcttgagtgtgtcatgttgccctttgtaaggttgcatagagac 803
Query: 124 aagtgagatagatagtgcttcagatttctcagtgtagctctcctatctggctgaaatgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aagtgagatagatagtgcttcagatttctcagtgtagctctcctatctggctgaaatgaa 743
Query: 184 ggttttcatttttcaactcaattcagcatcattttctggttcttatgcactgagtataat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggttttcatttttcaactcaattcagcatcattttctggttcttatgcactgagtataat 683
Query: 244 gagatttgctttgagttatcaacactgcaggggaatgtttaaattagaaagagaaacccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagatttgctttgagttatcaacactgcaggggaatgtttaaattagaaagagaaacccc 623
Query: 304 gccatcgatttctttgttaatggaataccaacacaaagatattttccctatattctatta 363
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 622 gccatcgatttctttgaaaatggaataaaaacacaaagatattttccctatattctatta 563
Query: 364 tcaaaatataatctaaattcaaagcaatcataccaacaatgccattgttttctcaagatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcaaaatataatctaaattcaaagcaatcataccaacaatgccattgttttctcaagatt 503
Query: 424 gtgaatttggttcaggaaatgtatttatcaaaagtaattaaatggaaataagaatcttta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtgaatttggttcaggaaatgtatttatcaaaagtaattaaatggaaataagaatcttta 443
Query: 484 tatactactgcataatatttcttgctaccatatataggaacagctaatgttgagtaaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatactactgcataatatttcttgctaccatatataggaacagctaatgttgagtaaata 383
Query: 544 ggagaatagatggaaaaatgcagatatcttgccttaagtcccttgactttggaattcaat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggagaatagatggaaaaatgcagatatcttgccttaagtcccttgactttggaattcaat 323
Query: 604 agcagccctttcaaactggggagtgaagttagaaggagggacaagcttcttcatgcagac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agcagccctttcaaactggggagtgaagttagaaggagggacaagcttcttcatgcagac 263
Query: 664 tgatgggagtgagagaaaaagaggaccccgagtcccttggtacttctagtcctcagcta 722
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 tgatgggagtgagagaaaaagaggaccccgagtctcttggtacttctagtcctcagcta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space: 791744
Effective search space used: 791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no274_k17.g1 MSMg01no274_k17.g1 CHROMAT_FILE:
MSMg01no274_k17.g1 PHD_FILE: MSMg01no274_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:15 2005
(688 letters)
>mm_chr2_124233074_124234160
Length = 1087
Score = 1307 bits (676), Expect = 0.0
Identities = 685/688 (99%), Gaps = 1/688 (0%)
Strand = Plus / Plus
Query: 1 tgcctgcctttgcctaccaagtgctgagattaaaggcatgcctgccagcttttcttttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctgcctttgcctaccaagtgctgagattaaaggcatgcctgccagcttttcttttct 260
Query: 61 taaggtttttttttttaaggcaactcccacatatgtgcctagtgcttaaccaataagaca 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggtttttttttt-aaggcaactcccacatatgtgcctagtgcttaaccaataagaca 319
Query: 121 aattcacgaatttgaaaaggagagaaaatgaagataataggcaaggtagtatccacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattcacgaatttgaaaaggagagaaaatgaagataataggcaaggtagtatccacaaac 379
Query: 181 caaaactttatttttcaaatgtgtgtttgacctccacttgttttcctgagagtacagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaaactttatttttcaaatgtgtgtttgacctccacttgttttcctgagagtacagact 439
Query: 241 ctagtagtaacgcacctataatgctgatccttggctttgccaagttcaaatcctaggtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctagtagtaacgcacctataatgctgatccttggctttgccaagttcaaatcctaggtct 499
Query: 301 gtggttactcgctctatgatcttgtattatttctcaacttctctgtgtcctggttctttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtggttactcgctctatgatcttgtattatttctcaacttctctgtgtcctggttctttc 559
Query: 361 atatagaaaataagaacaataactattccattatagggttacataatacatttgttatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atatagaaaataagaacaataactattccattatagggttacataatacatttgttatac 619
Query: 421 ggacagtagtccctgtcaccatataactgtgagtgtatgctgtgtcatttattttggaag 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 ggacagtagtccctgtcaccatataactgtgagtgtatgctgtgccatttattttggaag 679
Query: 481 ccagagtcaaaacattataattttctgcctttaagaaggctccattgctcggtgtgattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccagagtcaaaacattataattttctgcctttaagaaggctccattgctcggtgtgattc 739
Query: 541 attttgatctcttcacctctgtttggaagattgggtttccactctgcatttggtaacacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attttgatctcttcacctctgtttggaagattgggtttccactctgcatttggtaacacc 799
Query: 601 tccacactcagacacttagcactggtctaaatctaaacttcagtgctacacatcctttcg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tccacactcagacacttagcactggtctaaatctaaacttcagtgctacacatcctttca 859
Query: 661 agtgggtggatgtggaggcaagtgctaa 688
||||||||||||||||||||||||||||
Sbjct: 860 agtgggtggatgtggaggcaagtgctaa 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1087
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1077
Effective search space: 730206
Effective search space used: 730206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
