BAC Information

Click to search

BAC

Clone NameMSMg01-274O12
Chromosome2 (Build37)
Map Location 59,597,219 - 59,597,581
singlet/doubletsinglet
Overlap geneTanc1
Upstream geneUpp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O12.T7 (MSMg01no274_o12.b1)MSMg01-274O12.TJ (MSMg01no274_o12.g1)
ACCAG413502AG413503
length738736
length of high quality
(start - end)
363 (376 - 738)278 (72 - 349)
definitionCHROMAT_FILE: MSMg01no274_o12.b1 PHD_FILE: MSMg01no274_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:32 2005CHROMAT_FILE: MSMg01no274_o12.g1 PHD_FILE: MSMg01no274_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGACCTCGCTGGGTTTGGGAGACATGCAATGCCAGCCAGTTGACCTTGGT
TTTTTGTTTTGTTTCCGTTTTATACAAACACATTACCCCTCCAGAATAGT
TAAGAGCAGGCTTTGGCTGAGAATCGGAGACTTTCACTAGACAAACTCAC
TTAAGAGCACATGGTGACTTTGGAAAGCTTTTTAAAAGTTAAACATCTGT
GATTTTTCTATAGAGGGGGCTTTGGATTAGGGACAAAGAAAAGAAAATGC
AAACTGATTGAAGCCTCTTTTCTTTTTGCCATAAAAGTCAATGTATCACA
CCTTTTTTACTTCCCCCCCCCACGCATACGTATACCATATGTTAATGCTT
GTGGCGTTCAATAGATGCATTAATAGTTTGCGTTTGTTGTTTATTTGTTG
AGACAGGGTTTCTCTGTATAGCTTTGGCTGTTCTGGAATTCACTCTGTAA
ACCAGGCTGGCTTTGAACTCATAGAGATCCGCCTGCCTATGCCTCCCAAG
TGCTGGGATCAAAGGTGTGCATCGCCGCCACCACCTGGCTAGGTTTTGTT
ATTTTTTTAATCAGCCCCAAGACTTTGTTTGTTCTTGTCTGGGATTTGAT
TGGTCCACAGAATGTTCTAAACCCGCAGTGTGTTTCCCTGCACAAACATG
AGAGTAGAACTCTTAGCCTGTAAAAGCTTGTTTTTTCC
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGA
GATATGCTTTTAAATCCCGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCT
GGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTG
GCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTC
TGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGA
TTTTGTTACCCTCTATTTTTAGGCGTGGGAGACAAGCTCTCTTCTCTGAT
TTTCAGTGCCTCAGNAGCCTNTGCCCGCAAGNTCTCCTCTCTCAGGGAAG
GTGTACAGTTATAAAGTGTATGGNAATCCTCCTGGGGGGGGGTGAAGGCC
CAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGC
CAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTT
GCCGGGAAGGTGGCTGGTTGTCTGGAGCTGACGATGTTGCCGCCCCAGAA
TCCCTGCTACTCTCTCGCCCGTTTCAGAAATGGCTGGCACTCTGTATTCT
TTTTTGTCACCTGTGCTGCCTGCCCTCCGTGTAATCCCGTATTTCATATG
GCTTCCGTCGGCTTCCTGTTTCACAACCTCTCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o12.b1 MSMg01no274_o12.b1 CHROMAT_FILE:
MSMg01no274_o12.b1 PHD_FILE: MSMg01no274_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:32 2005
         (363 letters)



>mm_chr2_59597019_59597781
          Length = 763

 Score =  632 bits (327), Expect = 0.0
 Identities = 354/363 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacgtataccatatgttaatgcttgtggcgttcaatagatgcattaatagtttgcgttt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacgtataacatatgttaatgcttgtggcgttcaatagatgcattaatagtttgcgttt 260

                                                                       
Query: 61  gttgtttatttgttgagacagggtttctctgtatagctttggctgttctggaattcactc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtttatttgttgagacagagtttctctgtatagctttggctgttctggaattcactc 320

                                                                       
Query: 121 tgtaaaccaggctggctttgaactcatagagatccgcctgcctatgcctcccaagtgctg 180
           |||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 321 tgtagaccaggctggctttgaactcatagagatccgcttgcctctgcctcccacgtgctg 380

                                                                       
Query: 181 ggatcaaaggtgtgcatcgccgccaccacctggctaggttttgttatttttttaatcagc 240
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ggatcaaatgtgtgcatcgccgccaccacctggctaggttttgctatttttttaatcagc 440

                                                                       
Query: 241 cccaagactttgtttgttcttgtctgggatttgattggtccacagaatgttctaaacccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaagactttgtttgttcttgtctgggatttgattggtccacagaatgttctaaacccg 500

                                                                       
Query: 301 cagtgtgtttccctgcacaaacatgagagtagaactcttagcctgtaaaagcttgttttt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 cagtgtgtttccctgcacaaacatgagagtaaaactcttagcctgtaaaagcttgttttt 560

              
Query: 361 tcc 363
           |||
Sbjct: 561 tcc 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)