BAC Information

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BAC

Clone NameMSMg01-274P08
Chromosome2 (Build37)
Map Location 43,994,658 - 43,994,901
singlet/doubletsinglet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274P08.T7 (MSMg01no274_p08.b1)MSMg01-274P08.TJ (MSMg01no274_p08.g1)
ACCAG413540AG413541
length754744
length of high quality
(start - end)
---245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no274_p08.b1 PHD_FILE: MSMg01no274_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:36 2005CHROMAT_FILE: MSMg01no274_p08.g1 PHD_FILE: MSMg01no274_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTGGGCGCCAAACGATCCTATTTCCGAGCAGAGNGGAANNNNNNNGTAC
CAAAAAAAGAGGGNGANGANNANNGNNANANNGNNNGANAGANNGAATAT
TCCCCCGGAANAAAGGNNGNNGAAGANGNAGAGAAGNGAAAGAAGAAAAA
AAAGAAAAGACGGAAAAGAAAAAAGAAAAAAAAAAAAAAGAGGAAAGGAG
ACAGNATGGANCGAGGNANAGAAGAGGGNNATTTTTTTTTATTGTATTCT
TATACGATGTTGATAGATATTCCAGCCCAGAACAAAGCAAGCACGAACGT
TTTTTTTTTTCACACCACCCCCCGCCCGACCAACACCGTTTTTGGTAATT
CCCCCCCCCCCCCCCCAGAAATATGAGATGAGNNNGGGGCGGNNGNNNNN
NGACAAGNNAACNNNAAAAACCGCNNCCGCCCCGGGCCCCCNCCACNCAC
CCCCCACCTACACATCCTACGCATACAGCTCCCAATGTATTAACCTCCAA
TTTCCCGCACCTCACAAAGCCGCCTTATTTACACATATACTCCCCCTTTC
TTCCCACTATTATTTTTATCTTCCTCTTCCCCCCTACCCACTTTTTGTAT
ACGCATTTTTTCGACTATTTTCCTCTTCACCTTCACCCTTTCCCTTCCCT
TCTTTTTTCTTTTACCACCCTCGCTCTCATTATCCTCCCCTTCTTCCTTT
ATCCGTCCTTCTCTTTTTCCCTTATCCCTTTTTACCATTTCCTCCACTCT
CATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCAGATTGGCTGCAAGGCCCAAACCTAAGT
AAAATTCCTCTGACGCACATAGTGGAAGTAGAGAACAACTCCTAGAAAAA
TTTCTTTGATCTCACACAGCAAAAGAAACATGCAGACACCTACACACATA
CATATTTAGGTGCACACAAAACCACAGTATTTCAACAGAAATGCAATAGA
ATTCATGAGATATAACCCAAGATTATTCTTTTTTTTTTCTTGATACAGGG
TTTCCCTGTGTAGTTCTGGTTGTCCTGAACTCACTCTGTAGACCAGGCTG
TCCTTTAATACTTACACCTNCCCCANCGCCTCTGCCTCCCAAGTGTTGGG
ATTAAAGGCATGTACCAAAAATGAAAAAAACAAAGAATAGTGTGGACTGA
ATTCTACATCTGTAAACTTCTGGATGACGGGATGTTCTGGACTTGCACTT
TTATGAAAGTGACTTGTGCCTGTGTCCCGAGACTTTATTTCCCTCTCTCA
CGATAAGACTGCCAAGAATGAGATTCTCCCCCTTCTTGTTTTCTCTCGTA
ACATCACCTTCGTGCTATTCTTTGGATCACCTTGACGATTCCTGTCTCCA
CGACATATTTCCTCATTCCCACGCTAACCTGCTTTACCCCCTTACCCACC
GTATCCCGCTATGTGCCTTCCCAGCACCCCTCTTTTAGATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_p08.g1 MSMg01no274_p08.g1 CHROMAT_FILE:
MSMg01no274_p08.g1 PHD_FILE: MSMg01no274_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:36 2005
         (245 letters)



>mm_chr2_43994458_43995101
          Length = 644

 Score =  420 bits (217), Expect = e-122
 Identities = 238/245 (97%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcagattggctgcaaggcccaaacctaagtaaaattcctctgacgcacatagtggaag 60
           |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 444 actcaggttggctgcaaggcccaaacctaagtaaaattcctctgacccaaatagtggaag 385

                                                                       
Query: 61  tagagaacaactcctagaaaaatttctttgatctcacacagcaaaagaaacatgcagaca 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 tagagaacaactcctagaaaaatttctttgatctcacacagtaaaagaaacatgcagaca 325

                                                                       
Query: 121 cctacacacatacatatttaggtgcacacaaaaccacagtatttcaacagaaatgcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctacacacatacatatttaggtgcacacaaaaccacagtatttcaacagaaatgcaata 265

                                                                       
Query: 181 gaattcatgagatataacccaagattattcttttttttttcttgatacagggtttccctg 240
           |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 264 gaattcatgagatacaacccaagattattcttttttttt-cttgagacagggtttccctg 206

                
Query: 241 tgtag 245
           |||||
Sbjct: 205 tgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)