BAC Information

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BAC

Clone NameMSMg01-275F03
Chromosome2 (Build37)
Map Location 20,786,062 - 20,923,598
singlet/doubletdoublet
Overlap geneArhgap21, LOC433408
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4
Downstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F03.T7 (MSMg01no275_f03.b1)MSMg01-275F03.TJ (MSMg01no275_f03.g1)
ACCAG413807AG413808
length753756
length of high quality
(start - end)
658 (46 - 703)239 (125 - 363)
definitionCHROMAT_FILE: MSMg01no275_f03.b1 PHD_FILE: MSMg01no275_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:02 2005CHROMAT_FILE: MSMg01no275_f03.g1 PHD_FILE: MSMg01no275_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,922,962 - 20,923,598)(20,786,062 - 20,786,298)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATTTATCCCAAGCTGACCTCGAACTCACAGTGATACATCTGC
CTCTGCTTCCCCAGTGTTGGACTTAAAGGCGTGCTCCACCATCATCTGGC
AGTGATGTGTGAATCTTACTAGAGGAAAGACTATTACTGTTGGTGCTAGG
TGCTGTGGGTCCCTTGTTGATTACAGAAATACCAGTGACAAAGGGCAACA
CAGCTTCCTTGAAACACCAAATATGTTTTTGCTGTCTTAAGCCTCTGAAA
TTCAGGGTGGATTTGTAACTAAAATGTAAACCACTTCATCCTAATTAGCA
TGGTGTTTATCATACACTGACATTCTTGTACTTAGGTCATAGTTATTCTT
TGTTTTAATTTCTGTCCTTGTTTCTATGGTGATAAGTCTTGATTACTTTT
CCTTTGGTTCCATACTGTTTATTGAGCTGCAACAATCCTTTCTGCTAACT
TTCCAGTGGGTTTTATTTTCTGCGAAATCGTCACATCACAAAAATCTTTC
TTGAACGACTATCAATAGTGGAGTAGTTGGAATACATACTTGATTCATTA
TATTTGGCAAGGAAAAAGTATAGTTCTTTTTAACAGACCTCCACCCTTCA
GCTGCAACTCATTACTGTCTACCTAAATGGCCGGAACTAGCCAGAAAGCA
ACTGTTTCCCATTAGACAGGACACCCATCATCAGCTAGTCTCAGCAATAG
GCT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTACACAGAGAA
ACCCTGTGTTGAAAATCTAAACCTAAACAAACAAGCAAAAAACCAAAAAC
CCCAAAACAAAACAAAACAAAATAAATAAAGAAGTCCATGGAATATTTTT
TTTCCTCCTGCTGCTAGGAATTGACTCTGAGTATTGCTTGTATCAGTCAA
GGGCTGTAACATTGAGCCGTATCTCTGACAACAATAAACAAAACCAGAAC
CCCAACCCCCCACCATAATACAAGTAAAAAAATCAAGTTTTAGATCAGGG
ACATAATAAAATTCTCTATGACCCCACCCCCGCAAAGAACATGTACTAAC
AGGAAATGATGTCACCAAAACCATCAAAACAGCATGGGAAAGTGGGGCTG
TCCAGATCCAAGCCTGTTTGCAAATCTAAACTCTTTAGCAGCACTGAAGT
CTTCTTATGCAATGATTTTATTTCGCTGGATTCTATCTACTGAAGCACAT
GCTGATAACATTATACTTGTTTATATCATTTAGTGTTTGTAAAATAAAAT
GAACTAAAAATTAAGAGGGGAATTGAAAAGAACTAGGCTACATATTTCTA
GATGACTACTGAGGGGACTATTCCTCAGTGACGTAAAAGCCTCTCCAATA
GCCGGTCCTGGTAAAGAAGGACACAGGGCTCCTTCCTAGATACCCCGTTT
CTCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f03.b1 MSMg01no275_f03.b1 CHROMAT_FILE:
MSMg01no275_f03.b1 PHD_FILE: MSMg01no275_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:02 2005
         (658 letters)



>mm_chr2_20922657_20923714
          Length = 1058

 Score = 1185 bits (613), Expect = 0.0
 Identities = 631/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 22  caagctgacctcgaactcacagtgatacatctgcctctgcttccccagtgttggacttaa 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 942 caagctgacctcgaactcacagtgatacatctgcctctgcttccccagtgttggaattaa 883

                                                                       
Query: 82  aggcgtgctccaccatcatctggcagtgatgtgtgaatcttactagaggaaagactatta 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aggcgtgctccaccatcatctggcagtgatgtgtgaatcttactagaggaaagactatta 823

                                                                       
Query: 142 ctgttggtgctaggtgctgtgggtcccttgttgattacagaaataccagtgacaaagggc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctgttggtgctaggtgctgtgggtcccttgttgattacagaaataccagtgacaaagggc 763

                                                                       
Query: 202 aacacagcttccttgaaacaccaaatatgtttttgctgtcttaagcctctgaaattcagg 261
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 762 aacacagcttccttgaaacaccaaatatgtttttgctgtctcaaacctctgaaattcagg 703

                                                                       
Query: 262 gtggatttgtaactaaaatgtaaaccacttcatcctaattagcatggtgtttatcataca 321
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 702 gtggatttgaaactaaaatgtaaactacttcatcctaattagcatggtgtttatcataca 643

                                                                       
Query: 322 ctgacattcttgtacttaggtcatagttattctttgttttaatttctgtccttgtttcta 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctgacattcttgtacttaggtcatagttattctttgttttaatttctgtccttgtttcta 583

                                                                       
Query: 382 tggtgataagtcttgattacttttcctttggttccatactgtttattgagctgcaacaat 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggtgataagtcttgattacttttcctttggttccatactgtttattgagctgcaacaat 523

                                                                       
Query: 442 cctttctgctaactttccagtgggttttattttctgcgaaatcgtcacatcacaaaaatc 501
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 cctttctgctaactttccagtgggttttattttctgcgaaatcgtcacattacaaaaatc 463

                                                                       
Query: 502 tttcttgaacgactatcaatagtggagtagttggaatacatacttgattcattatatttg 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttcttgaacgactatcaatagtggagtagttggaatacatacttgattcattatatttg 403

                                                                       
Query: 562 gcaaggaaaaagtatagttctttttaacagacctccacccttcagctgcaactcattact 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcaaggaaaaagtatagttctttttaacagacctccacccttcagctgcaactcattact 343

                                                
Query: 622 gtctacctaaatggccggaactagccagaaagcaact 658
           |||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtctacctaaatggccggaactagccagaaagcaact 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_f03.g1 MSMg01no275_f03.g1 CHROMAT_FILE:
MSMg01no275_f03.g1 PHD_FILE: MSMg01no275_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:02 2005
         (239 letters)



>mm_chr2_20785862_20786500
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaacaagcaaaaaaccaaaaaccccaaaacaaaacaaaacaaaataaataaagaag 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 201 aaacaaacaagcaaaaaaccaaaaactccaaaacaaaacaaaacaaaataaacaaagaag 260

                                                                       
Query: 61  tccatggaatattttttttcctcctgctgctaggaattgactctgagtattgcttgtatc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tccatggaatattttttttcctcctgctgctagggattgactctgagtattgcttgtatc 320

                                                                       
Query: 121 agtcaagggctgtaacattgagccgtatctctgacaacaataaacaaaaccagaacccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaagggctgtaacattgagccgtatctctgacaacaataaacaaaaccagaacccca 380

                                                                    
Query: 181 accccccaccataatacaagtaaaaaaatcaagttttagatcagggacataataaaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accccccaccataatacaagtaaaaaaatcaagttttagatcagggacataataaaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)