BAC Information

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BAC

Clone NameMSMg01-276D01
Chromosome2 (Build37)
Map Location 37,284,308 - 37,284,598
singlet/doubletsinglet
Overlap geneZbtb6
Upstream geneOlfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2
Downstream geneZbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D01.T7 (MSMg01no276_d01.b1)MSMg01-276D01.TJ (MSMg01no276_d01.g1)
ACCAG414442AG414443
length809760
length of high quality
(start - end)
---291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no276_d01.b1 PHD_FILE: MSMg01no276_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:05 2005CHROMAT_FILE: MSMg01no276_d01.g1 PHD_FILE: MSMg01no276_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGGAGAGAGGGGGGGAGGGCGGCGGGGCGGCGGGGGGCGCGCCGCCGC
GGGGGCCGCGGGGGGCCGCGCCCCCCCCGCGGGGCGGGCGCGGGGCGGGG
ACGCCCCCCCGCACGGGGCGGCGCGCGCCGGGGGGGGGCGCGGGCCGGCG
GCGGGGGGGCCGCCCGCGGGGGGGCCGCGCGGGCGGGCGGCGGGCGGGCG
GGGGGGCCCCGCGGGGGGCGGCGCGGGGCCGCGCGGCGGCGGGGGCGCGG
GCCGGAGGGGGCGGCCACCCGCCGGCGCGACGGGCCGCCCCCCCCGGCGG
CCGCCGGGCGCGGGCGCGCCGGGCGGGGGGGGGGGGGGGCGGGGGCCGGG
GGCGGGGGGTAGGGGGGGGGGCGGGCCCGCCGGGGGGCCGGGCGGGGACG
CCGGCCGCCCCCCCCGCCGCCCCCCCCCACCCCCGCCCCGCGCCCCCCAC
CCACNGACCATCACGGGAAGAGAGTAAACAGAGACCGTATTTTATACCAC
CCCGNNNCCCCNCCCCGCCAANCCNNNNCCCGAATCATGTAAAGATCACC
NANCCGNCTGANTACGNNACTTCANNTATANTGCCTNGCCAAAATACAGN
NCGNNNAATTCCTCCAACCTGNNAGTTGATTCCTNAAGCNGTCAGGGNCN
GGAGGNAAAGNNACGNTCTAAAAAAAAAAAAGGGTTTCCAAAACCAACTC
CGTTTAGAGTCAATTCTAAGGTAGTAATATCCCANAAAATCCAAAAAAAC
AAAANGCTGTTTGAAAGGATATCTTTACAAGTTTTTTAAAAGCAGGAAAG
TGGTCAGGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATGGAAGTCATGGTACGGTAAATG
AGATCCAGAATCTGGATGAGAATTTTTCCTTGAGGCATCAGTGTCCCAGG
TGTCCAAGGGGATTTCTTCATGTAGAAAACTATCTGCGACACCTTAAGAT
GCATAAACTCTTTTTGTGCTTGCAGTGTGGGAAAACATTTACACAGAAGA
AAAATCTTAATCGGCATATTCGAGGACACATGGGTATAAGGCCCTTTCAG
TGTACTGTGTGTTTAAAGACCTTTACTGCTAAAAGCACACTTCAGGACCA
CTTGAACATACACAGTGTTTATCGGCCCCACCCCTGCCATTGTTGTGATA
TGGATTTCAAACACAAATCTGCTCTCAAAAAGCACTTAACCTCTGTTCAT
GGCAGGAGCAGTGGTGAAAAATTATCTAGGCCTGATCTCAAACGGCAGAA
TCTACTGTAATCAAATCAATGACTTTTTTAGACACATTTTATAAAAATGC
AGCACATGTAGTGTTGCCCCCCACCCAATCTGTATCATTTATTTTTGTTC
TTACATGTTATTCATTCTGAACTTCTAATAATTCCAAAGTTGGTGGTGTG
ATTAAGTTTATGAGAATCTACATTGTCTCAAACATTATGTATTTATCCTC
TGTTCAGGAGTAATTGCAGATTCTGAATTGTAGTTTTTAGATAAGTGATT
TATTGTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d01.g1 MSMg01no276_d01.g1 CHROMAT_FILE:
MSMg01no276_d01.g1 PHD_FILE: MSMg01no276_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:05 2005
         (291 letters)



>mm_chr2_37284108_37284798
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatggaagtcatggtacggtaaatgagatccagaatctggatgagaatttttccttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgatggaagtcatggtacggtaaatgagatccagaatctggatgagaatttttccttgag 432

                                                                       
Query: 61  gcatcagtgtcccaggtgtccaaggggatttcttcatgtagaaaactatctgcgacacct 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gcatcagtgccccaggtgtccaaggggatttcttcatgtagaaaactatctgcgacacct 372

                                                                       
Query: 121 taagatgcataaactctttttgtgcttgcagtgtgggaaaacatttacacagaagaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taagatgcataaactctttttgtgcttgcagtgtgggaaaacatttacacagaagaaaaa 312

                                                                       
Query: 181 tcttaatcggcatattcgaggacacatgggtataaggccctttcagtgtactgtgtgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcttaatcggcatattcgaggacacatgggtataaggccctttcagtgtactgtgtgttt 252

                                                              
Query: 241 aaagacctttactgctaaaagcacacttcaggaccacttgaacatacacag 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaagacctttactgctaaaagcacacttcaggaccacttgaacatacacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)