BAC Information

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BAC

Clone NameMSMg01-276L15
Chromosome2 (Build37)
Map Location 41,508,960 - 41,509,249
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276L15.T7 (MSMg01no276_l15.b1)MSMg01-276L15.TJ (MSMg01no276_l15.g1)
ACCAG414831AG414832
length757763
length of high quality
(start - end)
236 (128 - 363)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no276_l15.b1 PHD_FILE: MSMg01no276_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:43 2005CHROMAT_FILE: MSMg01no276_l15.g1 PHD_FILE: MSMg01no276_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGGA
ATTCTTTGCTGCTGGCATAAAGATCACCTTTTCCTCGGGTAGGAAGAAGA
CTACCACCTAGTGTCATGATCAGCCCTCTGTAGGGAGAGTCTGTAAGTAG
CTCAACTTCTCTGTGTTCAATGAGTTACTTAGGTGCTTTATTCAGACATC
GAACTGCACCACTAGTTTGTGAGAAGTAACACAAAGCACCTTGGCAATTG
CTAGGTTGTTTTGTGGCTTCTATGGGAATTCTTGGTCCAAGAACTTGATT
GGGCGTAACCCTGTCACTGGTTTTTTTTTTTGGAGGCAAGAGATGTTTAG
GTGGGGCCTTATCTCCTTCTTGATCCCCCCACCCCATTTAGCATGTGTAG
GTCTCTAAATGAGCTTTCCAATTACTCTTTATAAAAAGTATTCCTTTCCT
TACCCCCCCCTTTTTCTTCTGCTCTCATATGTTCAGTTCCAGTCTCTGTA
CACCCTCCTTCACTCATAACAATATGCTATCTATTCTCTTTCTTGGGAGA
TCCTTACATCTCCTCCCAAATCTTCTACTTTATAACACCTGTAATTAAAT
TGATTGTAGCCTGCTTATGGTAAACATCAGCTACCATCCTCTAATACAAT
CAATGTCTTTTGTGTACTAAGTTACCTTACTCATAGAATATAAGGACTTT
CTTCCTTTACCTGAAAATTTATGATATTTATATATGAGTTTTATGAAAAA
GTTAGAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCTGCCTCAGGGCTGCAAACA
ACATGGTTGTGCCTGTTGTACTGGCAGGGTGGCTAGCAGTGGCCAGCCCC
AAGGACAGGGCCATGTATAGTAGCTTGGCAGCTACTGCCCCCCTTATAGC
ACAATGTACTGTCCAATCACATGCACACCCTGATTCTGAACAGGATATCC
AACATGAACAATGGATCATTTTTTAAGCTCTCTTGAAAGAAACGCACTGT
CCATGCTGCAACTGGAGGCCATGTTAACAGCCATTGTTGGTCTCCCTGCC
ATTGTGGATTGTTGTTCCTTTTTTTCCACTNACGNCCCCAGAGAAGAGAT
GATAAACAGAGGTTCAGAAGCCCTGTGAGTCAACACTGTAAATGATAACA
TGGAGACCAGCTCCAGGGAGTCAGATCCATTTTAACTTGTGGTGATTCAA
GGATTATATAATATGGAGGGCTGGGGTTAGGAACATCCAGGATGGGTAAA
GGCTGAAGGCTTCGGGCACCAAAATGTCTCTTTAACATGGAGAAGCATCT
CAGGAATCTCAGGTGAACCTGTAACTTAATTGAGGCTGTGTGATATTCTG
AGGGTAGGGGCCTATGTGTGTGTGGCAGGAGGAGGGGATGTGGAAGAGCA
TGTTGTTGAATTCCCCCAATCACTAAAGGAATATCTCTGTATATGAATCT
TTCCTTCTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_l15.g1 MSMg01no276_l15.g1 CHROMAT_FILE:
MSMg01no276_l15.g1 PHD_FILE: MSMg01no276_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:43 2005
         (290 letters)



>mm_chr2_41508760_41509449
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcctgcctcagggctgcaaacaacatggttgtgcctgttgtactggcagggtggctag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aggcctgcctcagggctgcaaacaacatggttgtgcctgtggtactggcagggtggctag 260

                                                                       
Query: 61  cagtggccagccccaaggacagggccatgtatagtagcttggcagctactgcccccctta 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatggccagccccaaggacagggccatgtatagtagcttggcagctactgcccccctta 320

                                                                       
Query: 121 tagcacaatgtactgtccaatcacatgcacaccctgattctgaacaggatatccaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcacaatgtactgtccaatcacatgcacaccctgattctgaacaggatatccaacatg 380

                                                                       
Query: 181 aacaatggatcattttttaagctctcttgaaagaaacgcactgtccatgctgcaactgga 240
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aacagtggatcattttttaagctctcttgaaagaaatgcactgtccatgctgcaactgga 440

                                                             
Query: 241 ggccatgttaacagccattgttggtctccctgccattgtggattgttgtt 290
           |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ggccatgttaacagccattgttggtctccctgcctttgtggattgttgtt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)