Query= MSMg01no277_f08.b1 MSMg01no277_f08.b1 CHROMAT_FILE:
MSMg01no277_f08.b1 PHD_FILE: MSMg01no277_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:27 2005
(700 letters)
>mm_chr2_17934580_17935679
Length = 1100
Score = 1255 bits (649), Expect = 0.0
Identities = 687/703 (97%), Gaps = 8/703 (1%)
Strand = Plus / Plus
Query: 4 ggaattccactgtagccctgagtggtacatag--catcaagaatttctctgcagcgacac 61
|||||||||||| || ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 198 ggaattccactgcaggcctgagtggtaca-agtgcatcaagaatttctctgcagcgacac 256
Query: 62 ctagtctacccatcccagagcatcgtgagactggatggtctacagagttctaggatggcc 121
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctagtctacccatcccagagcctcgtgagactggatggtctacagagttctaggatggcc 316
Query: 122 agagctacccaatgaaactctgtctca-----aaacaaaacaaaacaaaacaaaacaaaa 176
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 317 agagctacccaatgaaactctgtctcagaacaaaacaaaacaaaacaaaacaaaacaaaa 376
Query: 177 caaaacaaaacaaaacaaaacaaaacaaaacaaaagagcccagcactttggagacgcagc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 caaaacaaaacaaaacaaaacaaaacaaaacaaaagagcccagcactttggagactcagc 436
Query: 237 taggctgatctctggaaattccagaccatcccggtctacacagtgagttccaggacagcc 296
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 taggctgatctctggaaattccagaccatcctggtctacacagtgagttccaggacagcc 496
Query: 297 agagctacatagtaagatcctgtctcaaaacacaaaaaccaaacaattttttaaaaataa 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agagctacatagtaagaccctgtctcaaaacacaaaaaccaaacaattttttaaaaataa 556
Query: 357 aagtaaataataataaataagtaaaattagccaaggccaaaggccagaaagtgaaagtct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagtaaataataataaataagtaaaattagccaaggccaaaggccagaaagtgaaagtct 616
Query: 417 tactgtaatctgaaaatgaatgtttgcattctacaactcagaaacgggtggagaatgtca 476
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 617 tactgtaatctgaaaatgaatgtttgcattctacaactcagaaacgggtagagaatgtca 676
Query: 477 tggacaatggtgtggagaagagtgaacacatctcatggacttttggactgagctacagtg 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tggacagtggtgtggagaagagtgaacacatctcatggacttttggactgagctacagtg 736
Query: 537 atttccaagtaaaacactgaaagcaagaagagcgtgttgatgaatgctgaaatgtcagct 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atttccaagtaaaacactgaaagcaagaagagcgtgttgatgaatgctgaaatgtcagct 796
Query: 597 atttgggagagtaaggcagagcccacctgggttatataaaagagtttaaacccagttact 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atttgggagagtaaggcagagcccacctgggttatataaaagagtttaaacccagttact 856
Query: 657 tctctgttgctgtgaaaaagaccatgaccaaaagcgacgtgag 699
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tctctgttgctgtgaaaaagaccatgaccaaaagcgacgtgag 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_f08.g1 MSMg01no277_f08.g1 CHROMAT_FILE:
MSMg01no277_f08.g1 PHD_FILE: MSMg01no277_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:27 2005
(611 letters)
>mm_chr2_17970560_17971570
Length = 1011
Score = 1145 bits (592), Expect = 0.0
Identities = 606/611 (99%)
Strand = Plus / Minus
Query: 1 gacctgtggacaagcttccagctcaggccggtgctgggtactctacaatgacctcacctc 60
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 756 gacctgtggacaagcttccagctcaggccggtgctgggcactctagaatgacctcacctc 697
Query: 61 tactccaggctagttaatggtgaaaagtgtactcatctctggcttatctgtgctttgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tactccaggctagttaatggtgaaaagtgtactcatctctggcttatctgtgctttgtta 637
Query: 121 tgggcctgacgagaaactaccttccccctgccccactcctcagcaaagaagcgaaatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgggcctgacgagaaactaccttccccctgccccactcctcagcaaagaagcgaaatcca 577
Query: 181 attgaattgttacatgttcctgaggtggagcctcgaactgctttcttggtcaaataactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 attgaattgttacatgttcctgaggtggagcctcgaactgctttcttggtcaaataactt 517
Query: 241 tgtttctgcttgtaaaaggcatggggggtggggggactcgagagaaattgccaacgtaag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgtttctggttgtaaaaggcatggggggtggggggactcgagagaaattgccaacgtaag 457
Query: 301 tctgtactgggctgggtcacctcagggtttaactttagagctcccagccagtctcctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tctgtactgggctgggtcacctcagggtttaactttagagctcccagccagtctcctcca 397
Query: 361 ctcccagaagggaaataccaggctattctgcacgttttcccttaagcttcattttccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctcccagaagggaaataccaggctattctgcacgttttcccttaagcttcattttccaaa 337
Query: 421 gaaaagaagggtggggtatatctatttgagcttgataatgttttttaaatgctttccttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaaaagaagggtggggtatatctatttgagcttgataatgttttttaaatgctttccttt 277
Query: 481 gaaacgataatagctgtatcggtaaaatgcaaataaagcaaaaataggcagtatttcttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gaaacgataatagctgtatcggtaaaatgcaaataaagcaaaaataggcagtatttcttt 217
Query: 541 aaaggagaatatacggntctctctctctctctctctctctctctctctctctctctctct 600
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aaaggggaatatacggttctctctctctctctctctctctctctctctctctctctctct 157
Query: 601 ctctctctctc 611
|||||||||||
Sbjct: 156 ctctctctctc 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
