Query= MSMg01no277_k06.b1 MSMg01no277_k06.b1 CHROMAT_FILE:
MSMg01no277_k06.b1 PHD_FILE: MSMg01no277_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:49 2005
(304 letters)
>mm_chr2_13322213_13322916
Length = 704
Score = 565 bits (292), Expect = e-165
Identities = 301/304 (99%)
Strand = Plus / Minus
Query: 1 caggctgttccagccgttctggctagagcttgcttgatgggatggtcatcactggcgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggctgttccagccgttctggctagagcttgcttgatgggatggtcatcactggcgaca 445
Query: 61 ctcaacttactggataactaactgggttcttctagccaacatgccaagccctctgttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 ctcaacttactggataactaactgggttcttctagccaacatgccaaaccctctgttgaa 385
Query: 121 agctctaaggttttgttgagccaaaatttttctttcacttatttttggaatatgtcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agctctaaggttttgttgagccaaaatttttctttcacttatttttggaatatgtcttct 325
Query: 181 ttcaagagagtcaaagacaccctctgtctattctcttttcctgtttactattgcaaaatt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 ttcaagagagtcaaagacaccctctgtctattctcttttcctgtttaccattgcaaaatt 265
Query: 241 ttcccccgtttgctgaatatttgctaagttcagagccagagttatgtaacaatattttac 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcccccgtttgctgaaaatttgctaagttcagagccagagttatgtaacaatattttac 205
Query: 301 taat 304
||||
Sbjct: 204 taat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_k06.g1 MSMg01no277_k06.g1 CHROMAT_FILE:
MSMg01no277_k06.g1 PHD_FILE: MSMg01no277_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:49 2005
(283 letters)
>mm_chr2_13161938_13162620
Length = 683
Score = 466 bits (241), Expect = e-136
Identities = 271/281 (96%), Gaps = 2/281 (0%)
Strand = Plus / Plus
Query: 1 aagccctaaggaattctgagatcacgtggtggtgcacctttcacaacaaattgccaagct 60
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aagccctaaagaattctgagatcacgtggtggtgcacctttcaaaacaaattgccaagct 260
Query: 61 cctctgacctggaattgtggttaccaagggcaataagaacaagtgctataacaacgagat 120
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cctctgacctggaattgtggctaccaagggcagtaagaacaagtgctataacaacgaga- 319
Query: 121 c-tgtgcattacacgaagtgtacgtgtgacacggaggtctcattttcagcctctgtggtc 179
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 catgtgcattacacaaagtgtacgtgtgacacagaggtctcattttcagcctctgtggtc 379
Query: 180 accgccacttaaacatgacaatgatggtactttgcctgtcctcaccaatgtgcactttgc 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 accgccacttaaacatgacaatgatggtacttggcctgtcctcaccaatgtgcactttgc 439
Query: 240 ctaaaaatgagttcatcagcctttttgcagcacacgagggg 280
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 ctaaaaatgacttcatcagcctttttgcagcacacgagggg 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
