BAC Information

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BAC

Clone NameMSMg01-279I03
Chromosome2 (Build37)
Map Location 121,282,603 - 121,361,902
singlet/doubletdoublet
Overlap gene2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Upstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418
Downstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279I03.T7 (MSMg01no279_i03.b1)MSMg01-279I03.TJ (MSMg01no279_i03.g1)
ACCAG416855AG416856
length766763
length of high quality
(start - end)
640 (46 - 685)544 (77 - 620)
definitionCHROMAT_FILE: MSMg01no279_i03.b1 PHD_FILE: MSMg01no279_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:06 2005CHROMAT_FILE: MSMg01no279_i03.g1 PHD_FILE: MSMg01no279_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,361,354 - 121,361,902)(121,282,603 - 121,283,146)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACTCTTACCAAGTTGCAAATCTAAAACAAGATTGTGTATTCTT
GAAGGGAACAGAATTGCTTCCCTTATAGCTGCATTAACTGTCTTCACATC
TTTTTTCCGGGCTGTCGAGAAATTGGGAATACAAAAGCCTCTTTAACTTG
ACATTATTTTCTGTATCTAAGTTCAACTGATTTAAATCGGTTTGGGGAAG
GTTGCTATAGAAAAGTACCAAAGCAAAAACCCTAAAACAACATCTACTAC
TAGTTTATGCAAAAGCATCATTTTTTGCTGTTTTCCACATGCCTGAACGG
GGCTCTCCCACTTCCATTTAACACACTATTAAGGTAGACCCAGAACACCT
GTAATCCCAGTGCTCAGGAAGCCAAAGCAACAGGGTCACAAGTTCAAAGC
CAACCTAGAATACAGTAAGACACTGGAGGTGCAAGGGGGAGGGGGTAATG
AGGAAGGGAGAGACTATAATACTGCAACACTAGTGATTCCATAGCAACAG
GGTAAACATAACTTCTAGTCTAAGACACCATTGCTGCAGTCTCTAAACTT
GAGGTTCCTCTAGACACACTTTCAGTCTTCTTCGTTTACCTGAGCTTACA
GTCAGCACATGTAGTCACCACTCTGTTACCAGTAACGGGGGAGAAATATG
CAGAGGCAATGCTTTTCGAGTGCTCAGTCAAGGAAATCAGAGGCTGGCTT
TCCCTGGACTTCAGGA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGTGTGTCTCTATGTGTGAA
AGGATTGCTCTTAGGAACAATGCCCCTTGGTGGTGTGGGTAGTGAACAGA
TAGTCGAAGGAGACTGCAGAAAACAAGCTGGAGAGGAAGTCAAAAGCGAA
CCTCTTTGCTAGCTGAAGCTTCTCAAGACAGGCACAAAGGTGTGGTCCAC
GCCTACCCCGCCCCTTATCTGGGCGGAAGCTGTGAGGGTTGCCGGAAGTT
GTGAAGCGGCAGCCTATGCGGCGGCGCGGTGAGATCGAAATGGCGACCGA
GGGAGACGTGGAGTTGGAGTTAGAGACCGAGACCAGCGGCCCGGAGCGGC
CTCCCGAGAAGCCAAGGAAACATGACAGTGGTGCTGCTGACCTAGAGCGG
GTTACTGACTATGCGGAGGAGAAGGAGATCCAGAGTTCGAATCTTGAAAC
GGTGAAGTTGGCTGGGAGCTTGTATGAGGGGTTGAGAGAGGGGCGGGAGA
GAGGTGAGACTGACCGGTTTGCTGCTCACTGGGGCTCCGGGAAGGCTGAT
AGCAATGGTGGGATTTGGCAGTAGGGTGGGGCTAAGCGACAGCACCCACC
CAGTCTGCTGTTTGCTTAAGAATTCGATAGAGATTGGGCCTAAATAGATC
TCATGTGCACGAAATTAGGCGTAGTCCCTTTGGTCCTGAAGACCCTCGTA
AGTTGTGGATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_i03.b1 MSMg01no279_i03.b1 CHROMAT_FILE:
MSMg01no279_i03.b1 PHD_FILE: MSMg01no279_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:06 2005
         (640 letters)



>mm_chr2_121361354_121362393
          Length = 1040

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaactcttaccaagttgcaaatctaaaacaagattgtgtattcttgaagggaac 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattccaactcttaagaagttgcaaatctaaaacaagattgtgtattcttgaagggaac 490

                                                                       
Query: 65  agaattgcttcccttatagctgcattaactgtcttcacatcttttttccgggctgtcgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agaattgcttcccttatagctgcattaactgtcttcacatcttttttccgggctgtcgag 430

                                                                       
Query: 125 aaattgggaatacaaaagcctctttaacttgacattattttctgtatctaagttcaactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaattgggaatacaaaagcctctttaacttgacattattttctgtatctaagttcaactg 370

                                                                       
Query: 185 atttaaatcggtttggggaaggttgctatagaaaagtaccaaagcaaaaaccctaaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atttaaatcggtttggggaaggttgctatagaaaagtaccaaagcaaaaaccctaaaaca 310

                                                                       
Query: 245 acatctactactagtttatgcaaaagcatcattttttgctgttttccacatgcctgaacg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acatctactactagtttatgcaaaagcatcattttttgctgttttccacatgcctgaacg 250

                                                                       
Query: 305 gggctctcccacttccatttaacacactattaaggtagacccagaacacctgtaatccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gggctctcccacttccatttaacacactattaaggtagacccagaacacctgtaatccca 190

                                                                       
Query: 365 gtgctcaggaagccaaagcaacagggtcacaagttcaaagccaacctagaatacagtaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gtgctcaggaagccaaagcaacagggtcacaagttcaaagccaacctagaatacagtaag 130

                                                                       
Query: 425 acactggaggtgcaagggggagggggtaatgaggaagggagagactataatactgcaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 acactggaggtgcaagggggagggggtaatgaggaagggagagactataatactgcaaca 70

                                                                       
Query: 485 ctagtgattccatagcaacagggtaaacataacttctagtctaagacaccattgctgcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ctagtgattccatagcaacagggtaaacataacttctagtctaagacaccattgctgcag 10

                    
Query: 545 tctctaaac 553
           |||||||||
Sbjct: 9   tctctaaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no279_i03.g1 MSMg01no279_i03.g1 CHROMAT_FILE:
MSMg01no279_i03.g1 PHD_FILE: MSMg01no279_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:07 2005
         (544 letters)



>mm_chr2_121282403_121283346
          Length = 944

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgtgtgtctctatgtgtgaaaggattgctcttaggaacaatgccccttggtggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 catgtgtgtgtctctatgtgtgaaaggattgctcttaggaacaatgtgccttggtggtgt 260

                                                                       
Query: 61  gggtagtgaacagatagtcgaaggagactgcagaaaacaagctggagaggaagtcaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtagtgaacagatagtcgaaggagactgcagaaaacaagctggagaggaagtcaaaag 320

                                                                       
Query: 121 cgaacctctttgctagctgaagcttctcaagacaggcacaaaggtgtggtccacgcctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaacctctttgctagctgaagcttctcaagacaggcacaaaggtgtggtccacgcctac 380

                                                                       
Query: 181 cccgccccttatctgggcggaagctgtgagggttgccggaagttgtgaagcggcagccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgccccttatctgggcggaagctgtgagggttgccggaagttgtgaagcggcagccta 440

                                                                       
Query: 241 tgcggcggcgcggtgagatcgaaatggcgaccgagggagacgtggagttggagttagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcggcggcgcggtgagatcgaaatggcgaccgagggagacgtggagttggagttagaga 500

                                                                       
Query: 301 ccgagaccagcggcccggagcggcctcccgagaagccaaggaaacatgacagtggtgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgagaccagcggcccggagcggcctcccgagaagccaaggaaacatgacagtggtgctg 560

                                                                       
Query: 361 ctgacctagagcgggttactgactatgcggaggagaaggagatccagagttcgaatcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgacctagagcgggttactgactatgcggaggagaaggagatccagagttcgaatcttg 620

                                                                       
Query: 421 aaacggtgaagttggctgggagcttgtatgaggggttgagagaggggcgggagagaggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacggtgaagttggctgggagcttgtatgaggggttgagagaggggcgggagagaggtg 680

                                                                       
Query: 481 agactgaccggtttgctgctcactggggctccgggaaggctgatagcaatggtgggattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agactgaccggtttgctgctcactggggctccgggaaggctgatagcaatggtgggattt 740

               
Query: 541 ggca 544
           ||||
Sbjct: 741 ggca 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)