BAC Information

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BAC

Clone NameMSMg01-279P14
Chromosome2 (Build37)
Map Location 26,347,868 - 26,348,182
singlet/doubletsinglet
Overlap geneNotch1
Upstream geneLcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582
Downstream geneEgfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279P14.T7 (MSMg01no279_p14.b1)MSMg01-279P14.TJ (MSMg01no279_p14.g1)
ACCAG417186AG417187
length770793
length of high quality
(start - end)
321 (46 - 366)294 (79 - 372)
definitionCHROMAT_FILE: MSMg01no279_p14.b1 PHD_FILE: MSMg01no279_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:42 2005CHROMAT_FILE: MSMg01no279_p14.g1 PHD_FILE: MSMg01no279_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGAATGTACTCTGCTGAAGTGCAGACTGCAGCTTTGGTGGGGG
ACCCCAGAGGTCACCCCACTCCTCAACACTCAGCAGCTCCCACTCCAACC
AAATGTCTTCCAACAAGGAAGAAGTCCCCTGCTTGGGAGGTCCCCATACT
GCAGCAGATAGGTAGGTCCCATCCCAATAATGGTCACAAATTGTCTCACA
GTGTACTGGCCATCCACGAGAATCTTCTGTTCTGCCTTAGGACACAGGAA
AGATGAGAAGGAGAGCCAGTTGAATGTACCCTGCTCTAGAAGGGGCCCAG
GGAAGAGGAGGTACTCTGTTTTTTTAGCCGCCCCCCACCCAGGGTGTCCC
AGGCCAGTGGGTCTAGGACACGCTCAAAGCTTGAAGAAACTGGCCCCTCT
GCCCCGTGGACACTGATGTCCCATGCTTGGCCTCTTTTCAAGTATCACTT
CACTGGCTTCCTGGTGCCCTCTCCAGTCCTTAGCTGAGACTGAGCACAAT
GAAAAGGACACGCCCCATCAGGTCTGAGCTGCCCAAGTCAGTCGGGCACC
TTCTGCAGCCTCATGGTAACACACATGGCTCTCAAAGAGAGACCCCCCCC
CCCCAAGACACATGAAGCCCATATACCAGCAGTAAGGTCAGCCAGCACCT
TTAGCTACAGGGGTCCCATGTTATCCCTCCTTTCAACCCAAGGAAATTGG
ACCTGGTCAAAAGAAGAAGG
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTACACAGA
GAAACCCTGTCTCAAAAAAACCAAAATAACCAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATGGAAAAGGAGAAGAGAAGAAG
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG
AGAAGAGAAGAGAAGAGAAGAGAAGAATTCTTTTTTGACTCCGTCTATTC
CTCAGACACTGTTAGATCATATTCTTCTTTCACCCCCCCCCCCACGACTA
ATGCCTTTTCTAGGTTTATAGCTTACAGGTTGAACTGATAAAAAGAATCT
AAGAGCTTGGCGTTTTTGTTTGATTGTTTGTTTTGTTTTGATTTTCAAGA
CAGGGTTTCTCTGTGTATCCCTGGCTGTTCTGGACTCACTCTATTGACCA
GGTTGTTCTTGAATTCAGATATCAGTTTGCCTCTGCCTTCTAAGTGCTGG
GATTTATGGGGTGCTTTATAACTGCCTTGGATTTTTGCTTTGACTTTTAT
CGACAGACGCTTTTTCCTTTTATTTTTTTTTCATCTCGTCACTCTTTCTG
TTCGTTTGTCTATTATCTGACTAGTTTATTTATTGTTTTGATGAAGTATA
TAGTTTTCTCTAATTTCTCTTTATTTATATAGTGTAAATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_p14.b1 MSMg01no279_p14.b1 CHROMAT_FILE:
MSMg01no279_p14.b1 PHD_FILE: MSMg01no279_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:42 2005
         (321 letters)



>mm_chr2_26347664_26348382
          Length = 719

 Score =  536 bits (277), Expect = e-157
 Identities = 307/317 (96%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgaatgtactctgctgaagtgcagactgcagctttggtgggggaccccagag 64
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgaatg-act-tgctgaagtgcagactgcagctttggtgggggaccccagag 262

                                                                       
Query: 65  gtcaccccactcctcaacactcagcagctcccactccaaccaaatgtcttccaacaagga 124
           ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 263 gtcaccccactcctcaaaactcagcagcccccacttcaaccaaatgtcttccaacaagga 322

                                                                       
Query: 125 agaagtcccctgcttgggaggtccccatactgcagcagataggtaggtcccatcccaata 184
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 323 agaagtcccctgcttgggaggtccccatactgcagcagataggaaggccccatcccaata 382

                                                                       
Query: 185 atggtcacaaattgtctcacagtgtactggccatccacgagaatcttctgttctgcctta 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 atggtcacaaattgtctcacagtgtactggccatccatgagaatcttctgttctgcctta 442

                                                                       
Query: 245 ggacacaggaaagatgagaaggagagccagttgaatgtaccctgctctagaaggggccca 304
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 443 ggacacaggaaaaatgagaaggagagccagttgaatgtaccctgctctagaaggggtcca 502

                            
Query: 305 gggaagaggaggtactc 321
           |||||||||||||||||
Sbjct: 503 gggaagaggaggtactc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space:   221520
Effective search space used:   221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)