BAC Information

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BAC

Clone NameMSMg01-280O16
Chromosome2 (Build37)
Map Location 111,879,154 - 111,879,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311
Downstream geneOlfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280O16.T7 (MSMg01no280_o16.b1)MSMg01-280O16.TJ (MSMg01no280_o16.g1)
ACCAG417884AG417885
length758736
length of high quality
(start - end)		631 (128 - 758)677 (58 - 734)
definitionCHROMAT_FILE: MSMg01no280_o16.b1 PHD_FILE: MSMg01no280_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:52 2005CHROMAT_FILE: MSMg01no280_o16.g1 PHD_FILE: MSMg01no280_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTATGACAACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCATTGACACGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGACGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTACATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGG
AGAATGAAGCCTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAAC
AAAACACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCTTACACTGGGGCATCAAGCCTTCACAGGACCAAAGGCCTCT
GCTCTCATTGATGTCCTACAAGGTCATACTCTGCTACATATGGGGCTGGA
GTTATGGGTCCCTTCATGTGTAATCTTCGGTTGGTGGTTTAGTCCCTGGG
ATCTCTGGAATTTCTGGTGGGTTCATATTGTTGTTCCTTCTATGGGGCTG
CAAGTTCCTTCAGCACCTTGGGTCCTTTCTCTAGCTCCTCCATTGGGGAC
CCTGTGTTCAGTTCAATGGTTGCCTTTGAGCATCCACTTGTGTATTTGTC
AGGCACTGGAAGGCTCCTGTCAGCAAATACTTGTTGGCATCCACAATAGT
GTCTGGGTTTAGTAACTCTATATGGGATGGATCCCCAGGTAGGACAGTTT
CTGGATGGCTTTACCTTCAGTTTCTCCTCTACACTTTGTATCTCCTCCTA
TGGGTATTTTGATCCCCCTTCTAAGAAGGACAGAAGAATCTCTTAACTCT
ACAGAAGGCCTGATCTAACACTCAGTAGCTGCACCTATTTCTAAATGAAC
AGACATAACTTCTTATACCTCATTTACATATCCATACTGAGCTGCTCAAA
GACTGAATTCAGATCCCTGTTTATCTGTGCTTAATCTTTTAAGTTTGGGT
AATAGCAGAGCTCCAAACACCCATTCAAGTAAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_o16.g1 MSMg01no280_o16.g1 CHROMAT_FILE:
MSMg01no280_o16.g1 PHD_FILE: MSMg01no280_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:52 2005
         (677 letters)



>mm_chr2_111878471_111879547
          Length = 1077

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Minus

                                                                        
Query: 284  tgtatttgtcaggcactggaaggctcctgtcagcaaatacttgttggcatccacaatagt 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tgtatttgtcaggcactggaaggctcctgtcagcaaatacttgttggcatccacaatagt 1018

                                                                        
Query: 344  gtctgggtttagtaactctatatgggatggatccccaggtaggacagtttctggatggct 403
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1017 gtctgggtttagtaactctatatgggatggatccccaggtaggacagtttctgggtggct 958

                                                                        
Query: 404  ttaccttcagtttctcctctacactttgtatctcctcctatgggtattttgatccccctt 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  ttaccttcagtttctcctctacactttgtatctcctcctatgggtattttgatccccctt 898

                                                                        
Query: 464  ctaagaaggacagaagaatctcttaactctacagaaggcctgatctaacactcagtagct 523
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 897  ctaagaaggacagaagaatctcttaactctacagaagacctgatctaacactcagtagct 838

                                                                        
Query: 524  gcacctatttctaaatgaacagacataacttcttatacctcatttacatatccatactga 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  gcacctatttctaaatgaacagacataacttcttatacctcatttacatatccatactga 778

                                                                        
Query: 584  gctgctcaaagactgaattcagatccctgtttatctgtgcttaatcttttaagtttgggt 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  gctgctcaaagactgaattcagatccctgtttatctgtgcttaatcttttaagtttgggt 718

                                              
Query: 644  aatagcagagctccaaacacccattcaagtaagg 677
            ||||||||||||||||||||||||||||||||||
Sbjct: 717  aatagcagagctccaaacacccattcaagtaagg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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