MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-288L24
Chromosome	2 (Build37)
Map Location	157,368,721 - 157,521,729
singlet/doublet	doublet
Overlap gene	Blcap, Nnat
Upstream gene	Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src
Downstream gene	Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b
Link	Open Mouse BAC browser

Click to get alignment info.

name	Epb4.1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13821 MGI:103010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	0610011L14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68295 MGI:1915545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlgap4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228836 MGI:2138865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Myl9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98932 MGI:2138915
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 247 ESTs, 35 Proteins

name	LOC433546 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433546
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 155 ESTs, 10 Proteins

name	Tgif2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228839 MGI:1915299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043677 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043677
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	1110008F13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67388 MGI:1914638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sla2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77799 MGI:1925049
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043880 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Ndrg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:29812 MGI:1352499
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668943 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Dsn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66934 MGI:1914184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9830001H06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320706 MGI:2444575
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 194 ESTs, 4 Proteins

name	Gm1332 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383766 MGI:2686178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	Samhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56045 MGI:1927468
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19650 MGI:103300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043882 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 101 ESTs, 5 Proteins

name	4922505G16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629499 MGI:3603828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20014 MGI:98085
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ghrh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14601 MGI:95709
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043678 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Manbal (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69161 MGI:1916411
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Src (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20779 MGI:98397
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Blcap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53619 MGI:1858907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nnat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18111 MGI:104716
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ctnnbl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66642 MGI:1913892
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043681 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 201 ESTs, 3 Proteins

name	Gm691 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:277432 MGI:2685537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610036D13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75425 MGI:1922675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610304G08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70470 MGI:1917720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tgm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21817 MGI:98731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D630003M21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228846 MGI:3606579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bpi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329547 MGI:3045315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lbp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16803 MGI:1098776
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9430008C03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68108 MGI:1915358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs

name	A930034L06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319317 MGI:2441845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230339M05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228850 MGI:2444531
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628935 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628935
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 310 ESTs, 4 Proteins

name	BC054059 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246747 MGI:2675492
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545481 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins

name	Slc32a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22348 MGI:1194488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Actr5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109275 MGI:1924748
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppp1r16b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228852 MGI:2151841
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Epb4.1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76056875 GeneID:13821 MGI:103010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : erythrocyte protein band 4.1-like 1 transcript_id : NM_001003815.2

name	Epb4.1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76056873 GeneID:13821 MGI:103010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : erythrocyte protein band 4.1-like 1 transcript_id : NM_013510.3

name	Epb4.1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76056874 GeneID:13821 MGI:103010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : erythrocyte protein band 4.1-like 1 transcript_id : NM_001006664.2

name	0610011L14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365065 GeneID:68295 MGI:1915545
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610011L14 gene transcript_id : NM_026661.3

name	Dlgap4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109891943 GeneID:228836 MGI:2138865
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large homolog-associated protein 4 (Drosophila) transcript_id : NM_146128.5

name	Dlgap4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109891941 GeneID:228836 MGI:2138865
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large homolog-associated protein 4 (Drosophila) transcript_id : NM_001042488.1

name	Dlgap4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109891939 GeneID:228836 MGI:2138865
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large homolog-associated protein 4 (Drosophila) transcript_id : NM_001042487.1

name	Myl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250223 GeneID:98932 MGI:2138915
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 114 ESTs, 4 Proteins product : myosin, light polypeptide 9, regulatory, transcript variant 1 transcript_id : XM_485171.5

name	LOC433546 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94367380 GeneID:433546
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 155 ESTs, 10 Proteins product : similar to 60S ribosomal protein L9 transcript_id : XM_485172.3

name	Tgif2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129800 GeneID:228839 MGI:1915299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TGFB-induced factor 2 transcript_id : NM_173396.2

name	LOC100043677 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250082 GeneID:100043677
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : hypothetical protein LOC100043677 transcript_id : XM_001480678.1

name	1110008F13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803233 GeneID:67388 MGI:1914638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110008F13 gene transcript_id : NM_026124.2

name	Sla2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373469 GeneID:77799 MGI:1925049
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Src-like-adaptor 2 transcript_id : NM_029983.3

name	Ndrg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305306 GeneID:29812 MGI:1352499
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-myc downstream regulated gene 3 transcript_id : NM_013865.1

name	Dsn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802518 GeneID:66934 MGI:1914184
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) transcript_id : NM_025853.2

name	9830001H06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250084 GeneID:320706 MGI:2444575
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 194 ESTs, 4 Proteins product : RIKEN cDNA 9830001H06 gene transcript_id : XM_283804.7

name	Gm1332 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250225 GeneID:383766 MGI:2686178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : gene model 1332, (NCBI) transcript_id : XM_357232.4

name	Samhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46909601 GeneID:56045 MGI:1927468
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAM domain and HD domain, 1 transcript_id : NM_018851.2

name	Rbl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859601 GeneID:19650 MGI:103300
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinoblastoma-like 1 (p107) transcript_id : NM_011249.1

name	LOC100043882 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250229 GeneID:100043882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 100 ESTs, 5 Proteins product : similar to small nuclear riboprotein Sm-D, transcript variant 2 transcript_id : XM_001481166.1

name	LOC100043882 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250227 GeneID:100043882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 1 Protein product : similar to small nuclear riboprotein Sm-D, transcript variant 1 transcript_id : XM_001481165.1

name	4922505G16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357507 GeneID:629499 MGI:3603828
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4922505G16 gene transcript_id : NM_001039557.2

name	Rpn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802799 GeneID:20014 MGI:98085
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribophorin II transcript_id : NM_019642.4

name	Ghrh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347516 GeneID:14601 MGI:95709
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth hormone releasing hormone transcript_id : NM_010285.2

name	LOC100043678 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250086 GeneID:100043678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical protein LOC100043678 transcript_id : XM_001480695.1

name	Manbal (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352862 GeneID:69161 MGI:1916411
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mannosidase, beta A, lysosomal-like transcript_id : NM_026968.2

name	Src (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253929 GeneID:20779 MGI:98397
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rous sarcoma oncogene transcript_id : NM_009271.3

name	Src (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253930 GeneID:20779 MGI:98397
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rous sarcoma oncogene transcript_id : NM_001025395.2

name	Blcap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84042528 GeneID:53619 MGI:1858907
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bladder cancer associated protein homolog (human) transcript_id : NM_016916.3

name	Nnat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123701814 GeneID:18111 MGI:104716
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuronatin transcript_id : NM_010923.2

name	Nnat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123701831 GeneID:18111 MGI:104716
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuronatin transcript_id : NM_180960.2

name	Ctnnbl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802102 GeneID:66642 MGI:1913892
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : catenin, beta like 1 transcript_id : NM_025680.3

name	LOC100043681 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250088 GeneID:100043681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 201 ESTs, 3 Proteins product : similar to Chain A, Crystal Structure Of Human Rangap1-Ubc9 transcript_id : XM_001480700.1

name	Gm691 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348495 GeneID:277432 MGI:2685537
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 691, (NCBI) transcript_id : NM_198627.1

name	2610036D13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859731 GeneID:75425 MGI:1922675
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610036D13 gene transcript_id : NM_029282.1

name	2610304G08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892156 GeneID:70470 MGI:1917720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610304G08 gene transcript_id : NM_027434.2

name	Tgm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130416 GeneID:21817 MGI:98731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transglutaminase 2, C polypeptide transcript_id : NM_009373.3

name	D630003M21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387782 GeneID:228846 MGI:3606579
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D630003M21 gene transcript_id : NM_177657.3

name	Bpi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386031 GeneID:329547 MGI:3045315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bactericidal permeablility increasing protein transcript_id : NM_177850.3

name	Lbp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865990 GeneID:16803 MGI:1098776
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipopolysaccharide binding protein transcript_id : NM_008489.2

name	9430008C03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250233 GeneID:68108 MGI:1915358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs product : RIKEN cDNA 9430008C03 gene, transcript variant 1 transcript_id : XM_001481174.1

name	9430008C03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250231 GeneID:68108 MGI:1915358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 9430008C03 gene, transcript variant 2 transcript_id : XM_001481175.1

name	A930034L06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286808 GeneID:319317 MGI:2441845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A930034L06 gene transcript_id : NM_175692.3

name	B230339M05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487298 GeneID:228850 MGI:2444531
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230339M05 gene transcript_id : NM_177658.3

name	LOC628935 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250235 GeneID:628935
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 310 ESTs, 4 Proteins product : similar to coiled-coil domain containing 72 transcript_id : XM_902784.3

name	BC054059 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:79750561 GeneID:246747 MGI:2675492
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC054059 transcript_id : NM_145635.2

name	LOC545481 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94367391 GeneID:545481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins product : similar to likely orthologue of H. sapiens chromosome 20 open reading frame 95 (C20orf95) transcript_id : XM_619836.3

name	Slc32a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125490379 GeneID:22348 MGI:1194488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 32 (GABA vesicular transporter), member 1 transcript_id : NM_009508.2

name	Actr5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91176334 GeneID:109275 MGI:1924748
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ARP5 actin-related protein 5 homolog (yeast) transcript_id : NM_175419.4

name	Ppp1r16b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372346 GeneID:228852 MGI:2151841
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1, regulatory (inhibitor) subunit 16B transcript_id : NM_153089.3

name	0610011L14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560139 CCDS:CCDS16967.1 GeneID:68295 MGI:1915545
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC68295 protein_id : NP_080937.2

name	Dlgap4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62530192 CCDS:CCDS16968.1 GeneID:228836 MGI:2138865
definition	GO_component : GO:0045202 - synapse [Evidence IDA] GO_process : GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; SAP90/PSD-95 associated protein 4; WW domain-binding protein 16; PSD-95/SAP90 binding protein 4; SAP90/PSD-95-associated protein 4 product : discs, large homolog-associated protein 4 isoform a protein_id : NP_666240.4

name	Dlgap4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109891940 GeneID:228836 MGI:2138865
definition	GO_component : GO:0045202 - synapse [Evidence IDA] GO_process : GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; SAP90/PSD-95 associated protein 4; WW domain-binding protein 16; PSD-95/SAP90 binding protein 4; SAP90/PSD-95-associated protein 4 product : discs, large homolog-associated protein 4 isoform b protein_id : NP_001035952.1

name	Dlgap4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109891942 GeneID:228836 MGI:2138865
definition	GO_component : GO:0045202 - synapse [Evidence IDA] GO_process : GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3; SAP90/PSD-95 associated protein 4; WW domain-binding protein 16; PSD-95/SAP90 binding protein 4; SAP90/PSD-95-associated protein 4 product : discs, large homolog-associated protein 4 isoform c protein_id : NP_001035953.1

name	Myl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250224 GeneID:98932 MGI:2138915
definition	codon_start : 1 product : myosin regulatory light polypeptide 9 isoform 1 protein_id : XP_485171.5

name	LOC433546 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:51706913 GeneID:433546
definition	codon_start : 1 product : similar to 60S ribosomal protein L9 protein_id : XP_485172.1

name	Tgif2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734180 CCDS:CCDS16969.1 GeneID:228839 MGI:1915299
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : TALE family homeobox product : TGFB-induced factor 2 protein_id : NP_775572.1

name	LOC100043677 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250083 GeneID:100043677
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480728.1

name	1110008F13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385630 CCDS:CCDS16970.1 GeneID:67388 MGI:1914638
definition	codon_start : 1 note : novel transcript product : RAB5-interacting protein protein_id : NP_080400.1

name	Sla2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249228 GeneID:77799 MGI:1925049
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0010008 - endosome membrane [Evidence ISS]; GO:0005770 - late endosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0047485 - protein N-terminus binding [Evidence ISS]; GO:0005070 - SH3/SH2 adaptor activity [Evidence ISS] GO_process : GO:0050851 - antigen receptor-mediated signaling pathway [Evidence ISS]; GO:0019724 - B cell mediated immunity [Evidence ISS]; GO:0006955 - immune response [Evidence IEA]; GO:0030522 - intracellular receptor-mediated signaling pathway [Evidence ISS]; GO:0050869 - negative regulation of B cell activation [Evidence ISS]; GO:0050849 - negative regulation of calcium-mediated signaling [Evidence ISS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0050776 - regulation of immune response [Evidence ISS]; GO:0042110 - T cell activation [Evidence ISS] [Evidence IDA] codon_start : 1 product : modulator of antigen receptor signaling MARS protein_id : NP_084259.1

name	Ndrg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305307 CCDS:CCDS16971.1 GeneID:29812 MGI:1352499
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0030154 - cell differentiation [Evidence IEA] [Evidence ISS]; GO:0030308 - negative regulation of cell growth [Evidence ISS]; GO:0007283 - spermatogenesis [Evidence ISS] codon_start : 1 note : N-myc downstream regulated 3 product : N-myc downstream regulated gene 3 protein_id : NP_038893.1

name	Dsn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385332 CCDS:CCDS16972.1 GeneID:66934 MGI:1914184
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : DSN1, MIND kinetochore complex component, homolog protein_id : NP_080129.1

name	9830001H06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250085 GeneID:320706 MGI:2444575
definition	codon_start : 1 product : hypothetical protein LOC320706 protein_id : XP_283804.7

name	Gm1332 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250226 GeneID:383766 MGI:2686178
definition	codon_start : 1 product : similar to orthologue of human chromosome 20 open reading frame 118 (C20orf118) protein_id : XP_357232.4

name	Samhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46909602 CCDS:CCDS16973.1 GeneID:56045 MGI:1927468
definition	GO_component : GO:0005622 - intracellular [Evidence ISS] GO_function : GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence ISS] [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : IFN-gamma induced; SAM domain and HD domain 1 product : SAM domain- and HD domain-containing protein 1 protein_id : NP_061339.2

name	Rbl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859602 CCDS:CCDS16974.1 GeneID:19650 MGI:103300
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : retinoblastoma-like protein 1 protein_id : NP_035379.1

name	LOC100043882 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250230 GeneID:100043882
definition	codon_start : 1 product : similar to small nuclear riboprotein Sm-D isoform 2 protein_id : XP_001481216.1

name	LOC100043882 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250228 GeneID:100043882
definition	codon_start : 1 product : similar to small nuclear riboprotein Sm-D isoform 1 protein_id : XP_001481215.1

name	4922505G16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319952 GeneID:629499 MGI:3603828
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC629499 protein_id : NP_001034646.1

name	Rpn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34996495 CCDS:CCDS16975.1 GeneID:20014 MGI:98085
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008250 - oligosaccharyl transferase complex [Evidence ISS] [Evidence IEA] GO_function : GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence ISS] [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0018279 - protein amino acid N-linked glycosylation via asparagine [Evidence ISS] [Evidence IEA] codon_start : 1 product : ribophorin II protein_id : NP_062616.2

name	Ghrh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753984 CCDS:CCDS16976.1 GeneID:14601 MGI:95709
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] codon_start : 1 product : growth hormone releasing hormone protein_id : NP_034415.1

name	LOC100043678 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250087 GeneID:100043678
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480745.1

name	Manbal (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60687512 GeneID:69161 MGI:1916411
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mannosidase, beta A, lysosomal-like protein_id : NP_081244.1

name	Src (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70794811 GeneID:20779 MGI:98397
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0030900 - forebrain development [Evidence IGI]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : Rous sarcoma oncogene isoform 1 protein_id : NP_033297.2

name	Src (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70794809 CCDS:CCDS16978.1 GeneID:20779 MGI:98397
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0030900 - forebrain development [Evidence IGI]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : Rous sarcoma oncogene isoform 2 protein_id : NP_001020566.1

name	Blcap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84042529 CCDS:CCDS16979.1 GeneID:53619 MGI:1858907
definition	GO_component : GO:0016021 - integral to membrane [Evidence NAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : bladder cancer related protein; Blcapbladder cancer associated protein homolog product : bladder cancer associated protein protein_id : NP_058612.3

name	Nnat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754864 GeneID:18111 MGI:104716
definition	GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 note : isoform alpha is encoded by transcript variant 1 product : neuronatin isoform alpha protein_id : NP_035053.1

name	Nnat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32140197 GeneID:18111 MGI:104716
definition	GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 note : isoform beta is encoded by transcript variant 2 product : neuronatin isoform beta protein_id : NP_851291.1

name	Ctnnbl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981221 CCDS:CCDS16982.1 GeneID:66642 MGI:1913892
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence ISS] codon_start : 1 exception : mismatches in translation product : nuclear protein NAP protein_id : NP_079956.2

name	LOC100043681 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250089 GeneID:100043681
definition	codon_start : 1 product : similar to Chain A, Crystal Structure Of Human Rangap1-Ubc9 protein_id : XP_001480750.1

name	Gm691 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348496 GeneID:277432 MGI:2685537
definition	codon_start : 1 product : hypothetical protein LOC277432 protein_id : NP_941029.1

name	2610036D13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859732 CCDS:CCDS16983.1 GeneID:75425 MGI:1922675
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : novel protein containing HEAT repeat domains product : hypothetical protein LOC75425 protein_id : NP_083558.1

name	2610304G08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328077 CCDS:CCDS16984.1 GeneID:70470 MGI:1917720
definition	codon_start : 1 product : cell-cycle related and expression-elevated protein in tumor protein_id : NP_081710.1

name	Tgm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678329 CCDS:CCDS16985.1 GeneID:21817 MGI:98731
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005829 - cytosol [Evidence TAS]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence TAS]; GO:0016020 - membrane [Evidence TAS] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA] [Evidence NAS]; GO:0005525 - GTP binding [Evidence NAS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003810 - protein-glutamine gamma-glutamyltransferase activity [Evidence IDA] [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007200 - G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) [Evidence ISS]; GO:0018149 - peptide cross-linking [Evidence IEA] [Evidence TAS]; GO:0045785 - positive regulation of cell adhesion [Evidence IMP] codon_start : 1 note : C polypeptide; tissue transglutaminase; protein-glutamine-gamma-glutamyltransferase; TG C; protein-glutamine gamma-glutamyltransferase product : transglutaminase 2, C polypeptide protein_id : NP_033399.1

name	D630003M21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244074 CCDS:CCDS16986.1 GeneID:228846 MGI:3606579
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC228846 protein_id : NP_808325.1

name	Bpi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244434 CCDS:CCDS16987.1 GeneID:329547 MGI:3045315
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0008289 - lipid binding [Evidence IEA] codon_start : 1 product : bactericidal/permeability-increasing protein protein_id : NP_808518.1

name	Lbp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865991 CCDS:CCDS16988.1 GeneID:16803 MGI:1098776
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0001530 - lipopolysaccharide binding [Evidence IDA] GO_process : GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0006869 - lipid transport [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : lipopolysaccharide-binding protein protein_id : NP_032515.2

name	9430008C03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250232 GeneID:68108 MGI:1915358
definition	codon_start : 1 product : hypothetical protein LOC68108 isoform 2 protein_id : XP_001481225.1

name	9430008C03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250234 GeneID:68108 MGI:1915358
definition	codon_start : 1 product : hypothetical protein LOC68108 isoform 1 protein_id : XP_001481224.1

name	A930034L06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286809 GeneID:319317 MGI:2441845
definition	codon_start : 1 product : hypothetical protein LOC319317 protein_id : NP_783623.2

name	B230339M05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487299 GeneID:228850 MGI:2444531
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC228850 protein_id : NP_808326.2

name	LOC628935 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82887191 GeneID:628935
definition	codon_start : 1 product : hypothetical protein protein_id : XP_907877.1

name	BC054059 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704114 CCDS:CCDS16990.1 GeneID:246747 MGI:2675492
definition	codon_start : 1 note : apidogenin; likely orthologue of H. sapiens small adipocyte factor 1 (SMAF1) product : small adipocyte factor 1 protein_id : NP_663610.1

name	LOC545481 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94367392 GeneID:545481
definition	codon_start : 1 product : similar to likely orthologue of H. sapiens chromosome 20 open reading frame 95 (C20orf95) protein_id : XP_619836.3

name	Slc32a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125490380 GeneID:22348 MGI:1194488
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IC]; GO:0045202 - synapse [Evidence ISS] GO_function : GO:0015495 - gamma-aminobutyric acid:hydrogen symporter activity [Evidence IDA]; GO:0015187 - glycine transporter activity [Evidence IDA] GO_process : GO:0015816 - glycine transport [Evidence IDA]; GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : vesicular inhibitory amino acid transporter; vasicular inhibitory amino acid transporter 10D product : solute carrier family 32 (GABA vesicular transporter), member 1 protein_id : NP_033534.2

name	Actr5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91176335 GeneID:109275 MGI:1924748
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : ARP5 actin-related protein 5 homolog protein_id : NP_780628.3

name	Ppp1r16b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346511 CCDS:CCDS16991.1 GeneID:228852 MGI:2151841
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0019903 - protein phosphatase binding [Evidence ISS] GO_process : GO:0007165 - signal transduction [Evidence ISS] codon_start : 1 note : whn-dependent transcript 4 product : protein phosphatase 1, regulatory (inhibitor) subunit 16B protein_id : NP_694729.1

name	LOC100043880 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043880
definition	number : 1 pseudo : _no_value

name	LOC668943 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668943
definition	number : 2 pseudo : _no_value

name	LOC668943 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668943
definition	number : 1 pseudo : _no_value

clone name	MSMg01-341M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544K06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-370M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430P23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-374G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298O20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-273J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482A21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-337N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153G06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-390B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486G13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-192E14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-499A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049I20
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-288L24.T7 (MSMg01no288_l24.b1)	MSMg01-288L24.TJ (MSMg01no288_l24.g1)
ACC	AG418490	AG418491
length	748	751
length of high quality (start - end)	565 (76 - 640)	292 (80 - 371)
definition	CHROMAT_FILE: MSMg01no288_l24.b1 PHD_FILE: MSMg01no288_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:54 2005	CHROMAT_FILE: MSMg01no288_l24.g1 PHD_FILE: MSMg01no288_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:54 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(157,521,295 - 157,521,729)	(157,368,721 - 157,369,012)
sequence	NAGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGCGGAATTCATCCATTTGTTCCAGGCTTAAAAGTGGGCTACTTTCAGGT AGCGTACACCTGAGTAAAGCTGCTTCGTCTGCCTAGCACAAGAGTGTGTG AAGAATGTGAGCGGTGGGTGTGAACGCTTGCTGAGCAAACAGGAAAACGT GAGGTTGGATCCCCAGCACCTGCAGATAGAGCCAGGTGTGGCACATCTGT AATCCTAGCAGAGAGAGAGAGAGATGGGAGATGGGAGGAGCCCTAGGGCC AGCCTGAATGGGGTGAGCTCCAGATTCAGTGAGAGACCCTGCCTCAAGGG AATATAGTAGCGCTCGGTAGAGTATTATACCCAGCATCCCTGCCCTCCGC ACATAGTGCATTAACCTATACACAGATCTGCATCCATGTGTACAACAGAC ATAAAAAGAAAAGATTCTGCTTTGTGTGAGACTCAATTTTAGCAGCAACA GAAAGATTGCAAAGAACCAGAGGTTCCCCCTTGGTTGTCTCTGGAGGTAG AGGAGGAGGCAGAAAGAGGCAAGAGTTCCCAGCTCAGTCAGTGTGGCTTC TTGGCTTTGAGTCCGGCGGTACCCAGGGTCCAGTCGGCAGGATCGGGCTG ATGATGTGGCCTCCGTGACTGAGTTTAGATAGCCAGTTGGATGATGCTAG AACAACCAAGGCCTTATTATGCCCAATTCAGCGTGCACGATGGATCCN	NCATCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATAAATCCAACAAAATTT CCTATAGAAAGTTCTTTTGAAAGTTGATAAATTTTAAAATCCATGCAGTA GGACTAACCCATAAGGATTAACAAAATAGTTCTGCAAAACAACAGAGGGC CAGCCAACCGGTCCTGCCCTGATCCAAGCTTAGCATCAAGCCTGGAAGCA CAGACACAGGCAGAGGACCAGGGATGGCCCGACAGTGCATGGGGCCCACA GGGTTGGTGCCAGGTAAAGGGAACAGGTTAGATCAAACTGTCTACATACC ACAAAATAGTGTTTGGGGTGGGGTATATTTTAGATCGCACCACTTATACA TATGGAATTTATTATTATACATGATATATTTATTAAACATGATATAATTA TATATTCATAAACTATATATATATCACTTATAGATGCCAGAGAAGAAAAT ACAAGAAATGTATATAAAGGAGGTTTCTTAAGATTGTCAAAAGAAGGTGT AAAAAGTAAAACCAACAGACAACAGCAATTCAATTAAGTGTCAAACCCCA CAATGTAGAAATATACCACCACCACAAACCACCAACAAAGCATTAGTATA TCAAACTCATAAAATATATAAGGATCTAAAAATCAATAAAAGAAAAATCT TTAAACAAACAAAAAGAAGAGGGAGGAGGAAGNCGTNTTTTTTCTTTTTT T
quality values	Open. Hide. 0 3 6 6 6 6 8 6 16 16 15 15 14 27 30 39 39 39 34 34 28 30 30 30 33 33 33 33 37 47 35 28 28 28 28 31 41 27 18 11 10 10 10 10 10 9 15 11 13 13 29 29 39 53 36 36 36 36 53 53 41 41 37 37 37 26 22 15 16 10 10 10 13 10 10 15 22 25 34 30 34 37 48 50 48 50 53 57 57 57 57 57 57 47 47 47 42 42 50 59 59 59 59 59 53 53 53 53 53 47 53 53 53 53 50 59 59 59 57 53 53 50 59 41 34 28 22 21 19 18 14 14 15 30 30 59 47 50 50 50 50 53 53 53 53 53 53 57 57 57 57 57 37 37 37 37 36 42 48 53 57 57 59 57 57 57 57 57 57 57 57 54 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 44 37 39 30 30 30 33 33 39 46 48 59 68 68 54 54 53 53 57 57 59 57 57 57 57 57 57 59 57 57 57 57 57 53 59 59 59 59 59 37 25 20 12 12 10 8 8 8 8 11 15 21 30 30 47 48 48 48 57 59 59 57 59 48 59 59 59 59 59 59 59 50 53 50 68 68 50 54 54 57 57 57 57 68 68 68 68 68 51 51 50 50 41 41 41 41 47 42 57 44 46 46 46 46 54 57 48 57 39 44 44 57 27 27 12 12 12 22 24 35 42 42 47 47 46 44 43 43 50 59 59 57 59 57 68 68 57 57 68 68 68 68 68 68 68 68 68 68 59 59 54 54 54 57 57 57 57 57 57 59 59 59 52 52 52 59 59 59 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 59 59 68 68 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 57 57 57 59 68 68 68 59 57 57 57 68 57 57 57 57 59 59 59 59 59 43 43 41 43 43 59 52 43 43 29 28 28 43 36 43 43 32 38 13 13 13 24 34 42 42 44 57 44 44 31 31 29 32 32 43 36 31 18 15 13 13 13 20 32 36 37 42 42 42 42 42 37 37 44 43 46 32 32 20 20 20 32 28 30 23 28 23 25 25 36 40 31 31 20 20 23 25 28 29 23 22 23 23 28 30 16 15 12 11 11 15 27 23 22 11 11 11 19 21 28 30 30 26 28 12 10 9 13 10 13 19 31 37 32 20 20 16 16 16 20 11 10 8 8 8 8 8 7 9 9 13 13 20 23 18 19 16 11 10 10 10 10 10 10 13 6 6 6 6 9 13 11 11 11 14 12 12 12 13 21 23 25 26 16 14 12 10 8 8 10 9 10 12 16 13 11 11 12 10 11 9 15 11 9 9 12 12 16 16 24 14 12 11 11 11 3 0	Open. Hide. 0 3 6 6 6 6 8 10 10 10 9 9 15 12 34 39 41 41 37 37 44 39 39 37 37 37 39 44 44 53 53 57 53 53 50 50 50 57 50 40 37 37 24 29 29 42 43 57 57 57 54 50 53 68 68 68 68 68 68 68 68 68 68 68 48 48 41 41 41 48 59 68 68 50 50 50 50 50 50 50 50 50 68 68 68 68 68 68 68 68 50 50 50 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 52 52 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 57 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 48 47 48 48 48 48 59 59 59 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 41 28 20 15 11 10 8 8 8 8 8 10 21 23 19 12 11 15 12 14 14 14 12 12 12 13 13 24 28 30 34 41 42 50 50 53 50 57 57 57 57 59 59 59 59 59 59 57 53 36 29 29 22 22 20 31 33 33 33 33 30 30 30 37 33 31 32 37 24 18 19 19 17 17 14 12 12 10 11 14 26 19 22 18 20 18 24 17 18 21 22 22 22 21 21 24 26 28 28 28 28 32 34 28 28 33 34 36 36 34 34 37 42 28 28 30 42 42 48 48 42 48 48 48 57 68 68 68 68 57 57 68 48 48 47 47 47 48 59 59 59 59 57 57 57 57 57 57 57 59 59 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 68 68 57 57 48 48 48 57 59 57 57 57 57 54 54 54 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 68 68 68 57 57 50 50 47 57 57 57 57 57 57 57 59 57 57 57 54 57 57 68 57 57 47 47 43 59 57 59 59 57 57 57 59 59 59 59 59 59 59 59 48 48 48 48 48 59 59 59 59 59 59 57 57 54 54 54 54 57 57 57 59 59 48 48 59 59 59 59 59 43 43 43 59 59 59 48 48 48 48 59 59 59 59 47 59 59 59 44 41 41 37 41 41 47 47 47 59 39 41 41 47 37 37 46 59 59 59 59 59 41 37 37 37 37 37 37 37 37 40 35 28 24 26 28 26 17 24 21 28 28 34 41 59 59 41 41 39 39 31 28 26 28 28 23 28 19 15 19 17 3 0 3 6 3 0 3 8 8 9 10 13 11 10 8 8 8 11 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no288_l24.b1 MSMg01no288_l24.b1 CHROMAT_FILE:
MSMg01no288_l24.b1 PHD_FILE: MSMg01no288_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
         (565 letters)



>mm_chr2_157520765_157521729
          Length = 965

 Score =  779 bits (403), Expect = 0.0
 Identities = 427/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 131 tggatccccagcacctgcagatagagccaggtgtggcacatctgtaatcctagcagagag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 tggatccccagcacctgcagatagagccaggtgtggcacatctgtaatcctagcagagag 906

                                                                       
Query: 191 agagagagatgggagatgggaggagccctagggccagcctgaatggggtgagctccagat 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 agagagagatgggagatgggaggagccctagggccagcctgaatggggtgagctccagat 846

                                                                       
Query: 251 tcagtgagagaccctgcctcaagggaatatagtagcgctcggtagagtattatacccagc 310
           |||||||||||||||||||||||||||||||||||| |||||||||| |  |||||||||
Sbjct: 845 tcagtgagagaccctgcctcaagggaatatagtagcactcggtagaggaggatacccagc 786

                                                                       
Query: 311 atccctgccctccgcacatagtgcattaacctatacacagatctgcatccatgtgtacaa 370
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 atccctggcctccgcacatagtgcattaacctatacacagatctgcatccatgtgtacaa 726

                                                                       
Query: 371 cagacataaaaagaaaagattctgctttgtgtgagactcaattttagcagcaacagaaag 430
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 725 cagacataaaaagaaaagattctgctttgtgtgagattcaattttagcagcaacagaaag 666

                                                                       
Query: 431 attgcaaagaaccagaggttcccccttggttgtctctggaggtagaggaggaggcagaaa 490
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 665 attgcaaagaaccagaggttcccccttggttgtctctggaggtggaggaggaggcagaaa 606

                                                                       
Query: 491 gaggcaagagttcccagctcagtcagtgtggcttcttggctttgagtccggcggtaccca 550
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaggctagagttcccagctcagtcagtgtggcttcttggctttgagtccggcggtaccca 546

                          
Query: 551 gggtccagtcggcag 565
           |||||||||||||||
Sbjct: 545 gggtccagtcggcag 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_l24.g1 MSMg01no288_l24.g1 CHROMAT_FILE:
MSMg01no288_l24.g1 PHD_FILE: MSMg01no288_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
         (292 letters)



>mm_chr2_157368521_157369212
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtataaatccaacaaaatttcctatagaaagttcttttgaaagttgataaattttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtataaatccaacaaaatttcctatagaaagttcttttgaaagttgataaattttaaaa 260

                                                                       
Query: 61  tccatgcagtaggactaacccataaggattaacaaaatagttctgcaaaacaacagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tccatgcagtaggactaacccataaggattaacaaaatagttctgcaaaacaacagagga 320

                                                                       
Query: 121 ccagccaaccggtcctgccctgatccaagcttagcatcaagcctggaagcacagacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagccaaccggtcctgccctgatccaagcttagcatcaagcctggaagcacagacacag 380

                                                                       
Query: 181 gcagaggaccagggatggcccgacagtgcatggggcccacagggttggtgccaggtaaag 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaggaccaggggtggcccgacagtgcatggggcccacagggttggtgccaggtaaag 440

                                                               
Query: 241 ggaacaggttagatcaaactgtctacataccacaaaatagtgtttggggtgg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaacaggttagatcaaactgtctacataccacaaaatagtgtttggggtgg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information