BAC Information

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BAC

Clone NameMSMg01-288M03
Chromosome2 (Build37)
Map Location 84,676,036 - 84,843,935
singlet/doubletdoublet
Overlap geneSlc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
Upstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10
Downstream geneSsrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288M03.T7 (MSMg01no288_m03.b1)MSMg01-288M03.TJ (MSMg01no288_m03.g1)
ACCAG418496AG418497
length728745
length of high quality
(start - end)
291 (125 - 415)176 (119 - 294)
definitionCHROMAT_FILE: MSMg01no288_m03.b1 PHD_FILE: MSMg01no288_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:54 2005CHROMAT_FILE: MSMg01no288_m03.g1 PHD_FILE: MSMg01no288_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,843,645 - 84,843,935)(84,676,036 - 84,676,210)
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCTGTTCCGCCTTGACCTGTGAAGCACGCTCCCACCATTACC
CAGTGGGAGACATAGCGTGCCCCAGTTGCCCAGACATAACTTACCAAAGT
TAAAGATGGCCTTGTTCCTCACACCCTTTCCCTGACCTCCAGGCCCTCCT
TCCAGCTCAGTGGCTCTGCTTCATTCAGCATCCCCTACGGGGTCACTTTC
ATTGTCCCCTGGGCCTCACTCTCTGGAGAAGAGACTCCTGCCTTCCCTCA
CTCTGCCCACAGGGATCACCTTTGAGTCAGTTCCCCCTGAGAGTATTTTC
ACTGAATGGTTCTTATTCTTCCTCAGCACGTTCAGCACTCAGGCCTTGCC
CAGGTACAGGCAGGGCCCCAAATCTGCTACCTGAACTTTCCTGTACTGCT
GCTTGATCATGACAGAGGCGTCTGGGCCTGAGCTTCCTCTTCTGTAAAAT
GGGAGCACCTAGGATAGGAACCAAGGGGACATAGACTGCCTTATAAGATG
CAATTACGTGAAACACTGCACAAGGGTACACATGGAACAAGAGGAGTCTA
CATAGGGAAGGACCCCTTGGTTGGCAGCCTGTGGAAGCTGTTATGCTGTG
GCTGGCATGGGTCAGCTAAGGGTATAAAAGCCCATAACGCACATGAGGCT
GAAATTGTTCTGTACTCCATTGGCCGCG
CATGACAGTGGGAGCCTGGCGGCCGCCTGTTCCCACGTGAGGNGAANCAA
GAATTTCACGAGGACGNCAAGGAGGCGNCCTCCCNAGGGACGGAAAAGGT
GTTTATCCTATCCTTAAAGTATCTGCAGACATCAACTTACACATTACCCT
TAAAGACCATTTCCCGAGCTCCTGACTGGGTCCAGCTCCCCTCCCGGAGT
ACATTCCCCAGTTATACACTCCTACCATGGCCCTTGTTCTGCCTCCCCAA
ACCTCAGGTGCTCTCCTGAATAGAATCTTTTTTTTTTTAATTTCACACTA
GTTTTTTTTTTTACGAACANNGCCAAGGCNACCCCAAAAGTTTTTTTTTT
TCTCCCCCCCCCCCCCCCCGAGGAAGGGCAGCGGTTGGGGCCTGGCGCCC
CCCCAGAATTTGAGTTCAAAAAAGTTGGCCGGGGCGATGGGCCTCTCTTT
CCAGTGACGGCCGACTAGGCCATCTTTTGACACATATGCTTCTAGACTCC
AGAGCCCCTGTTATATGGTTTAGTTCATATTGCAGATCCCCCTATACGGC
TGCAGTCCTGCCTTTAGTTCCTCAGGTTATCCCCCTTGTCCCCCTCTTTA
TGTCGCGTTCCCGCTAACCCCTTCCTTAATACCCGCCAGACACGAACAAG
TATTACTCCGTTTTTTTTTTTGCGCGGCAGATTAGCAGCCGCCCTAGCTT
TCCCCCGTTATGTTCGTCGGATTTATCTTACCCCACTTATCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_m03.b1 MSMg01no288_m03.b1 CHROMAT_FILE:
MSMg01no288_m03.b1 PHD_FILE: MSMg01no288_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
         (291 letters)



>mm_chr2_84843445_84844135
          Length = 691

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgcccagacataacttaccaaagttaaagatggccttgttcctcacaccctttccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gttgcccagacataacttaccaaagttaaagatggccttgttcctcacaccctttccctg 432

                                                                       
Query: 61  acctccaggccctccttccagctcagtggctctgcttcattcagcatcccctacggggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 431 acctccaggccctccttccagctcagtggctctgcttcattcagcatcccctagggggtc 372

                                                                       
Query: 121 actttcattgtcccctgggcctcactctctggagaagagactcctgccttccctcactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 actttcattgtcccctgggcctcactctctggagaagagactcctgccttccctcactct 312

                                                                       
Query: 181 gcccacagggatcacctttgagtcagttccccctgagagtattttcactgaatggttctt 240
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| 
Sbjct: 311 gcccacagggatcacctttgagtcagtaccccctgagagtatttccactgaatggttctc 252

                                                              
Query: 241 attcttcctcagcacgttcagcactcaggccttgcccaggtacaggcaggg 291
           | |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 251 agtcttcctcagcaggttcagcactcaggccttgcccaggcacaggcaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no288_m03.g1 MSMg01no288_m03.g1 CHROMAT_FILE:
MSMg01no288_m03.g1 PHD_FILE: MSMg01no288_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
         (176 letters)



>mm_chr2_84675835_84676411
          Length = 577

 Score =  323 bits (167), Expect = 4e-93
 Identities = 173/175 (98%), Gaps = 1/175 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tatctgcagacatcaacttacacattacccttaaagaccatttcccgagctcctgactgg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tatctgcagacatcaacttacacattacccttaaagaccatttcccgagctcctgactgg 261

                                                                       
Query: 62  gtccagctcccctcccggagtacattccccagttatacactcctaccatggcccttgttc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtccagctcccctcccggagtacattccccagttatacactcctaccatggcccttgttc 321

                                                                  
Query: 122 tgcctccccaaacctcaggtgctctcctgaatagaatcttttttttttt-aattt 175
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 322 agcctccccaaacctcaggtgctctcctgaatagaatcttttttttttttaattt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 577
Length adjustment: 8
Effective length of query: 168
Effective length of database: 569
Effective search space:    95592
Effective search space used:    95592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)