BAC Information

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BAC

Clone NameMSMg01-290B05
Chromosome2 (Build37)
Map Location 178,864,339 - 178,864,497
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264
Downstream geneLOC100043168, LOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290B05.T7 (MSMg01no290_b05.b1)MSMg01-290B05.TJ (MSMg01no290_b05.g1)
ACCAG419455AG419456
length729825
length of high quality
(start - end)
240 (90 - 329)160 (142 - 301)
definitionCHROMAT_FILE: MSMg01no290_b05.b1 PHD_FILE: MSMg01no290_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:31 2005CHROMAT_FILE: MSMg01no290_b05.g1 PHD_FILE: MSMg01no290_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACTATATTTGCGGCGCTAAACACCACATAGGTCCGGACAAGGGAATC
TTCTTTTTTCCCCGAAATTCTTATTTATGAATGAGTGCTATCTATACTAT
GTATGTCTGCCCATGCGTGCAGTACTTTGGAGGCCAGAGGGGCCATTAGA
TTCCCTATAACTGGAGTTGTAAGCTCATGTGAAACACACCGTGTGGGCAC
TGACCTAAACAAGAACAGCCAGTTCTCTTAACAGCCCACCTCTCCAGCCC
AAAGGTGAAAAATATTTCTTTAGTTTTCTACTAGTAATCTTTTCTAAAAA
TTCCAGTTTCTGTAGTTCTCTCAAAAGCTATTGAAATGCCCAGGGTTGAT
CTTCCGAATCTCTGTAAGAAACGTCCGCATCATTGGATCATCACAATGGT
ACAGCTTGAGGGGAGGCTGCTCCAACCAGTTTCCCTTGCTGACGCGAGTC
TTCATCTTTGCCCAAGTGTCCTCTCCGTGGCTGCAAGGCATATCCCACAC
CCGCTATTTCATCATCTCTAATATCGTACGATGTACATGCCGATAAAACC
TTTCTCTAATTCCAATACTCTGTACGACGTATCTGGATTAGGTTTGCTAA
GAACCAATTATTGAACGGACCCATATACCTGGCAACTCCGCCCTTAAATT
ATAGAACCTGTTCCTCTCATTGTATACCATAGCTTACGTGTATATTGCGC
ACCCCATTCCTATTCACGGTTCTTATTTG
CTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCGCAAATCACAGCGTGAAGTCCACATTAGCAGT
GTGCTCTCCATGAGGAAGTTTAGCACGACAGAAAAAAACAGGATTTCCCA
CAATGCTGCTCTGCCCCAGCAGGTAACGACATCCGTTTTATAGAGAAATA
ATGGAAAGAATAAGTCTGTACACAACTTTAAGATCAAACCAATGAGCAAG
AAAGTTTTATTCTGATGGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGGTGTGTGTGTGTGTGAGTGATTTTTTTTTATTATAAAACACAAATT
CCATTTTTTAAAGATTTTTTTTTTTTTCTCCCCCCCTCCCCCCCTTACAT
TTTTTACCCACTTTTTTTCTTTTTTTTTTCTTCTTCTTTAAAAAAAAATT
AAATTTTTCCCTGCGTGTGCGTTCTAATTGGTAATATTCCATTTTATTTA
CCTGTTATTTATATTCTACTCTTTTCTTTTTTACCTTTCTTTACACCGTC
TCTACTACTCTCTATTACTATTCGACTCAGTTTTTTTTTAACTCTTTTCC
CACTAATTTATACACAACCGTTCTATTATTTTACAAATGTCTCACATTAT
ATCGCTTGTTTCACGCGTGTAAATTAATTACCTCTAAAATATAATCTCTA
CTTTCCCCCCTTAATCTCTTTTGTCGCGGATCTTACCTTTTATTGATGAC
ACCTTCTACCACACTTTTTTATTCACCATCTATACCGCACCACCACCATA
TTCTTTCACTCTCCCACTACTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_b05.g1 MSMg01no290_b05.g1 CHROMAT_FILE:
MSMg01no290_b05.g1 PHD_FILE: MSMg01no290_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:31 2005
         (160 letters)



>mm_chr2_178864170_178864728
          Length = 559

 Score =  286 bits (148), Expect = 4e-82
 Identities = 157/160 (98%), Gaps = 1/160 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatttcccacaatgctgctctgccccagcaggtaacgacatccgttttatagagaaataa 60
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 328 gatttcccacaatgctgctctgccccagcagg-aatgacatccgttttatagagaaataa 270

                                                                       
Query: 61  tggaaagaataagtctgtacacaactttaagatcaaaccaatgagcaagaaagttttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 269 tggaaagaataagtctgtacacaactttaagatcaaaccaatgagcaagaacgttttatt 210

                                                   
Query: 121 ctgatggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ctgatggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 559
Length adjustment: 8
Effective length of query: 152
Effective length of database: 551
Effective search space:    83752
Effective search space used:    83752
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)