BAC Information

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BAC

Clone NameMSMg01-290F17
Chromosome2 (Build37)
Map Location 133,198,144 - 133,198,426
singlet/doubletsinglet
Overlap genenone
Upstream geneProkr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
Downstream geneA430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290F17.T7 (MSMg01no290_f17.b1)MSMg01-290F17.TJ (MSMg01no290_f17.g1)
ACCAG419660
length705711
length of high quality
(start - end)
---283 (83 - 365)
definitionCHROMAT_FILE: MSMg01no290_f17.b1 PHD_FILE: MSMg01no290_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:53 2005CHROMAT_FILE: MSMg01no290_f17.g1 PHD_FILE: MSMg01no290_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXX
NNTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGGAAACCTGACAC
TTTTAATGAATCTGATAACAGGAATCCCCCCGAGGTAATATGAAACCAGC
TTCTAAAGTTAGTTTCTGCCCAGATAGGCATAGGACCCAGAAATTTTCGT
GAATTCCAGGCTGTCATGGGAAAGCAGAGAGGGGAGCCTCCCAGATGAGA
CAAAGGCATGTGAAATGATGCGCTCTGGAATCTGAATGCCATGAGGAAAG
CTAAATCAGAGAAGAAACAGCTAGCCGTGATAGAGAGCTGAACTTTACCT
CCTATGTGGTTAAGTATTGATGGAGTGCCCCGCCCCCCGCTATTTATGCA
TCGACTTATGTATTATGTGCTTACTTATTCATTCTTTCATTTTGTAGCAT
GGAGACAGAAAACAGTGTGCAGAGTGTATACAGTATACTGGATCTAGACT
GTCTAGAAATTTCAAAACATTAAGACAATCTTAGAAGTGATCAAAAGCCA
ACAAAGGTCTCTACATGAAGATTAGTAGACTTTAGCTCAAAGTTACATTA
TTTTTCTCCATGCTACAAAATGAACAAGTAAATGCATTCTTTTATTCATT
ATTAACATCCATATCATATTCCTGTGGCTATGAAGTTGGCTTTTTAATAC
CGCAGTGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_f17.g1 MSMg01no290_f17.g1 CHROMAT_FILE:
MSMg01no290_f17.g1 PHD_FILE: MSMg01no290_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:53 2005
         (283 letters)



>mm_chr2_133197944_133198626
          Length = 683

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatggaaacctgacacttttaatgaatctgataacaggaatccccccgaggtaatatg 60
           ||||||||||||||||||||  ||||||||||||||||||||||||   |||||||||||
Sbjct: 483 cagatggaaacctgacacttaaaatgaatctgataacaggaatccctgggaggtaatatg 424

                                                                       
Query: 61  aaaccagcttctaaagttagtttctgcccagataggcataggacccagaaattttcgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaccagcttctaaagttagtttctgcccagataggcataggacccagaaattttcgtga 364

                                                                       
Query: 121 attccaggctgtcatgggaaagcagagaggggagcctcccagatgagacaaaggcatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 attccaggctgtcatgggaaagcagagaggggagcctcccagatgagacaaaggcatgtg 304

                                                                       
Query: 181 aaatgatgcgctctggaatctgaatgccatgaggaaagctaaatcagagaagaaacagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatgatgcgctctggaatctgaatgccatgaggaaagctaaatcagagaagaaacagct 244

                                                      
Query: 241 agccgtgatagagagctgaactttacctcctatgtggttaagt 283
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 243 agccgtgaaagagagctgaactttacctcctatgtggttaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)