Query= MSMg01no290_i14.b1 MSMg01no290_i14.b1 CHROMAT_FILE:
MSMg01no290_i14.b1 PHD_FILE: MSMg01no290_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:07 2005
(291 letters)
>mm_chr2_28913555_28914245
Length = 691
Score = 499 bits (258), Expect = e-146
Identities = 282/290 (97%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 1 ggttactggttgctcttccagaggacctgggttcaattcccagtacttacatcgcagctc 60
||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 201 ggttattggttgctcttccagaggacctgggttcaattcccagtacccacatggcagctc 260
Query: 61 acaacaactgtctatagctccaattccaggggatctgacaccttcacagacacacatgca 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 acaacaactgtctatagctccaattccaggggatctgacaccttcacaaacacacatgca 320
Query: 121 ggcaaaacaccaatgcacataaaatttataaaattttgaaaaagaaagaattctttctg- 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaaaacaccaatgcacattaaatttataaaattttgaaaaagaaagaattctttctgt 380
Query: 180 gaaaatgctttattttattgtactcatatgggttttggcctacaggaaagtctatgcccc 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaa-tgctttattttattgtactcatatgggttttggcctacaggaaagtctatgcccc 439
Query: 240 acatatatgcagtatatgtgagttcactgatccatcttcagcactaaatg 289
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatatatgcagtatatgtgagttcactgatccatcttcagcactaaatg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no290_i14.g1 MSMg01no290_i14.g1 CHROMAT_FILE:
MSMg01no290_i14.g1 PHD_FILE: MSMg01no290_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:07 2005
(289 letters)
>mm_chr2_29110078_29110766
Length = 689
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 agtcagttcaggatggaaaagcaggggctgcactcccagataattccccttttcacactg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 635 agtcagttcaggatggaaaagcaggggctgcactcccagataaatccccttttcacactg 576
Query: 61 acggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacagggctagttagg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 575 acggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacacggctagttagg 516
Query: 121 tgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagcatctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagcatctttg 456
Query: 181 catgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtcccgggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 catgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtcccgggtc 396
Query: 241 atctgaactggaagttaaaagcatccttctccatgccttgttgaagg 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atctgaactggaagttaaaagcatccttctccatgccttgttgaagg 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
