BAC Information

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BAC

Clone NameMSMg01-290L23
Chromosome2 (Build37)
Map Location 167,169,924 - 167,339,196
singlet/doubletdoublet
Overlap geneB4galt5, Slc9a8, Spata2, Zfp313
Upstream genePpia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951
Downstream geneSnai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L23.T7 (MSMg01no290_l23.b1)MSMg01-290L23.TJ (MSMg01no290_l23.g1)
ACCAG419942AG419943
length720728
length of high quality
(start - end)
636 (39 - 674)239 (134 - 372)
definitionCHROMAT_FILE: MSMg01no290_l23.b1 PHD_FILE: MSMg01no290_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005CHROMAT_FILE: MSMg01no290_l23.g1 PHD_FILE: MSMg01no290_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,169,924 - 167,170,545)(167,338,962 - 167,339,196)
sequence
NTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGC
GGAATTCTGTTCAGTTTATGCTTGACCACACGGAGAGTTTGAGGCTAGCC
TGGGCTACATGAGACCATGTCTCAACAGAACAACATCTGTGAACCTGAGA
CAGAAAAAGAACACTGAAGGGGAAAGAAAGTGTCTTAGCAGGAGGTTTTT
CATTTCCCAAAGCAATCAGATTCCCCAATCTGTATTTCCTCCAGAAAATT
CATATATTAAGGACATGGAGACATTCAGAAGGCATTTTTAAGGCAGAAAC
AACAAAGGGTTTTCCTGACATGACGTATGTAAGGGAATCTGAACAGTCCA
GTATTTATCAGAAAAACATCTATTTGATTATGTAGCAAGTGTACTTTCTC
TATAATCTTCAGTCCAGTACTTCTTTAGAATATTAACAAACTACTAGCAC
TCCATATACTAAATCATTCATTATCTTGATTGAGGTATAATTGTCTTTTA
ACACACAGGACTCGCCCATAGACTCAAAGGGCACTGGCAGAACAATTCAN
AGTTCAAAGCCTGTTTAGGCTACAGAGTGAGTGAAATCCTGCCTTGATTT
CACAGTTGTTTTTAAAGATTTGTTGATTCTATGTATGAGTGCTCTGTCTG
CATGTACACTTGCATGCCAGAAGGGGGCATAGGATCCCATTACAGATGGC
TGTGAGCCACCATGTGGTTG
NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACTGCAGAAACAG
ACAAACACATGCAAACACATCTCTTTTGCACCATGCTGCTTCTAAGAGGC
TTCAGTGCCCAAAAACCAAGCAAGGCTTTTGAAAGTGAAGAGTCCAGTGG
ACGTGACAGTCACACACTCACCTTCAGTGAGGCAAAACTCTGAGTGGTTT
TAGCAAAGACATTACCTCTGCAGTTAGTGAAAGGTCAGTCTTGGAGAATA
AATGTTTGTTTTTTCCGCTCTGAAACAAGTCTCTAGCCTGGGCTGGTCTT
GAGTTCTTGATCCTCCTGGTTTTTCTTTCCACGCGCCCGCCACAACAAAA
GTGTGCCCACAAGCTGAGGTGTGACTATCTTTTAAAAAGAAATTTTTGGT
CGGGCAGTGGTGACTCACACCTTTAATCCCAGCACTTGGGAGGTAGAGAC
AGGCGGATTTCTGAGCTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG
GACAGCCAGGGCTACACAGAGAAACCGTGTCTCGGAAAACAAAAAACAAA
AAACAAAACAAAACAAAAAGACTTTTTTATAATGTATTTATGTGCCTGTG
TGTGTCTGCAGAATCCAGAAGAGGGTGCTAGATCTCCAGAGATAGAGATC
CAAGCACTATGTGTCCCTCACTCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l23.b1 MSMg01no290_l23.b1 CHROMAT_FILE:
MSMg01no290_l23.b1 PHD_FILE: MSMg01no290_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:23 2005
         (636 letters)



>mm_chr2_167169711_167170745
          Length = 1035

 Score = 1137 bits (588), Expect = 0.0
 Identities = 614/623 (98%), Gaps = 1/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattctgttcagtttatgcttgaccacacggagagtttgaggctagcctgggctacatg 73
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattctgttcagttcatgcttgaccacacggagagtttgaggctagcctgggctacatg 273

                                                                       
Query: 74  agaccatgtctcaacagaacaacatctgtgaacctgagacagaaaaagaacactgaaggg 133
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 274 agaccatgtctcaacagaacaacatttgtgaacctgagacagaaaa-gaacactgaaggg 332

                                                                       
Query: 134 gaaagaaagtgtcttagcaggaggtttttcatttcccaaagcaatcagattccccaatct 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaaagaaagtgtcttagcaggaggtttttcatttcccaaagcaatcagattccccaatct 392

                                                                       
Query: 194 gtatttcctccagaaaattcatatattaaggacatggagacattcagaaggcatttttaa 253
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 393 gtatttcctccagaaaattcatatagtaaggacatggagacattcagaaggcatttttaa 452

                                                                       
Query: 254 ggcagaaacaacaaagggttttcctgacatgacgtatgtaagggaatctgaacagtccag 313
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 453 ggcagaaacaacaaagggttttcctgccgtgacgtatgtaagggaatctgaacagtccag 512

                                                                       
Query: 314 tatttatcagaaaaacatctatttgattatgtagcaagtgtactttctctataatcttca 373
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 513 tatttatcagaaaaacatctatttggttatgtagcaagtgtactttctctataatcttca 572

                                                                       
Query: 374 gtccagtacttctttagaatattaacaaactactagcactccatatactaaatcattcat 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtccagtacttctttagaatattaacaaactactagcactccatatactaaatcattcat 632

                                                                       
Query: 434 tatcttgattgaggtataattgtcttttaacacacaggactcgcccatagactcaaaggg 493
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tatcttgattgagatataattgtcttttaacacacaggactcgcccatagactcaaaggg 692

                                                                       
Query: 494 cactggcagaacaattcanagttcaaagcctgtttaggctacagagtgagtgaaatcctg 553
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cactggcagaacaattcaaagttcaaagcctgtttaggctacagagtgagtgaaatcctg 752

                                                                       
Query: 554 ccttgatttcacagttgtttttaaagatttgttgattctatgtatgagtgctctgtctgc 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ccttgatttcacagttgtttttaaagatttgttgattctatgtatgagtgctctgtctgc 812

                                  
Query: 614 atgtacacttgcatgccagaagg 636
           |||||||||||||||||||||||
Sbjct: 813 atgtacacttgcatgccagaagg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space:   641650
Effective search space used:   641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no290_l23.g1 MSMg01no290_l23.g1 CHROMAT_FILE:
MSMg01no290_l23.g1 PHD_FILE: MSMg01no290_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:23 2005
         (239 letters)



>mm_chr2_167338762_167339400
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgcttctaagaggcttcagtgcccaaaaaccaagcaaggcttttgaaagtgaagagt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 435 tgctgcttctaagaggcttcagtgccccaaaaccaagcaaggcttttgaaagtgaagagt 376

                                                                       
Query: 61  ccagtggacgtgacagtcacacactcaccttcagtgaggcaaaactctgagtggttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccagtggacgtgacagtcacacactcaccttcagtgaggcaaaactctgagtggttttag 316

                                                                       
Query: 121 caaagacattacctctgcagttagtgaaaggtcagtcttggagaataaatgtttgttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 315 caaagacattacctctgcagttagtgaaaggtcagtcttggagaataaatgtttgttttc 256

                                                                  
Query: 181 tccgctctgaaacaagtctctagcctgggctggtcttgagttcttgatcctcctg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tccgctctgaaacaagtctctagcctgggctggtcttgagttcttgatcctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)