BAC Information

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BAC

Clone NameMSMg01-290L24
Chromosome2 (Build37)
Map Location 57,176,056 - 57,176,293
singlet/doubletsinglet
Overlap geneGpd2
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910
Downstream geneLOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L24.T7 (MSMg01no290_l24.b1)MSMg01-290L24.TJ (MSMg01no290_l24.g1)
ACCAG419944AG419945
length723731
length of high quality
(start - end)
320 (47 - 366)239 (132 - 370)
definitionCHROMAT_FILE: MSMg01no290_l24.b1 PHD_FILE: MSMg01no290_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005CHROMAT_FILE: MSMg01no290_l24.g1 PHD_FILE: MSMg01no290_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGACTATACCATCTGGTCCTGGGGTTTTCTTGGTTTGGAGATT
TTAATGACTGCTTCTATTCCTATACGGGTTATGGGATGGTTTATCTGTTT
AGATGGTTTATCTGATCCTGTTTAACTTTGGTATTTGGTATCTGTCTAGA
AAATTGTCCATTTCATCCAGATTTTCCAGTTTTGTTGAGTACAGGCTTTT
GTAGTAGGATCCGATGATTTTTTAAATTTTCCTCAGTTTCTCTTGTTATA
TCTCCCTTTTCATTTCTGATTTTGTTAATTTGTATATGGTCTCTATGTCC
TAAGGGTTTATCTATCTTGTTTTTCTCCCTCCCCAGCCAGCTCCTGGTTT
TGTTGATTCTTTGAATAGTTCTATTTATTTCTACTTGGTTGATTTCAGCC
CCAAGTTTGATTATTTCCTGCTGTCTACTCCAATTTGTTGATTTGCTTCT
GAGCTTTCAGGTGTACTGTCAAGCTCCCAGTGTATGCTCTCTCCAGTTTC
TTTTTGGAAGCACTCAGAGCTATGAGTTTTCCTCTTAGCACTGCTTTCAT
TGTGTCCCATAAGTTTTGGTATGATGTGTCTTCATTTACATTAAATTCTA
AAAAGTCTTTAATTTCTTTCTTATTTCATCCTTGACCAAGCTTCACCAAG
TAGAGCGCTGTTCTGATTCCATG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCATGTTCATTATTTTTATAA
ACACTAAACCTAAATTTTTGGGACATGCCCATATGGGGTGGGCTTGTGAT
TCTAGTAGACCCTACTTGAGATTATTCACTCATTTAGGATTTCCCCTGAA
CAGTACCTTCCCACAAACTACACGAGATCAATCTGGAAATTCTGGGTACT
ACCAACAGCAACAACAACAAAAAATCCACTGAGTGGTAAAGAAAAGGCTT
GGGAAAGAAGTGACTGCTATTGGTGTCTGACCTGTGTTTGGTAAGGGACT
CATACACTGTCTAGGAACTTTTTTGGTCCGCACCGCCACGAAATAACTCG
TGTTTCATAAAGCTGCAGTGCTTTGCATCAGGAAGAGAATCAAAAAAGCC
TCTGGACACTGTTGTCCCATACTTTCAAACTGATACTTAACCTTCTGTAG
ACGGGAGAGCTCAAGGATTAAAGGAAGGGCTATGAGGGAGTATGAGGTGA
GGAGTGGGCCTCTCCTGCACTTGAGGGTGGAACCTCTCTCACATTGCTTT
CAGGTTTCTTTCTGTCCAGAGTAGAATGGGCATCTTCTAGGAAACTCAGT
ATCATCAAACCCCAAAGAGTACGTTGTGTGATTGTGCTGTTCTCCGTGTT
CAACATTTAGTTCATCCGATAAAGGGAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l24.g1 MSMg01no290_l24.g1 CHROMAT_FILE:
MSMg01no290_l24.g1 PHD_FILE: MSMg01no290_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:23 2005
         (239 letters)



>mm_chr2_57175856_57176494
          Length = 639

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggggtgggcttgtgattctagtagaccctacttgagattattcactcatttaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggggtgggcttgtgattctagtagaccctacttgagattattcactcatttaggatt 260

                                                                       
Query: 61  tcccctgaacagtaccttcccacaaactacacgagatcaatctggaaattctgggtacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccctgaacagtaccttcccacaaactacacgagatcaatctggaaattctgggtacta 320

                                                                       
Query: 121 ccaacagcaacaacaacaaaaaatccactgagtggtaaagaaaaggcttgggaaagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaacagcaacaacaacaaaaaatccactgagtggtaaagaaaaggcttgggaaagaagt 380

                                                                     
Query: 181 gactgctattggtgtctgacctgtgtttggtaagggactcatacactgtctaggaact 238
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gactgctattggtgtctgacctgtgtttggtaagggactcatatactgtctaggaact 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)