Query= MSMg01no290_p19.b1 MSMg01no290_p19.b1 CHROMAT_FILE:
MSMg01no290_p19.b1 PHD_FILE: MSMg01no290_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:40 2005
(319 letters)
>mm_chr2_87686200_87686918
Length = 719
Score = 331 bits (171), Expect = 4e-95
Identities = 279/317 (88%), Gaps = 10/317 (3%)
Strand = Plus / Minus
Query: 5 gaattcttgggacagtcactgatacataacagatttccagtgaggaaaagtttgctagaa 64
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct: 492 gaatccttgggacagtcactgatacataacagatttccagagaagaaaaatttgccagaa 433
Query: 65 aaaaatacgtgggtttctgtaatgca-gagtccatgctggttactagt-attatgaggaa 122
|||||||| | |||||||||||||| | |||||| ||| ||| || | |||||||||||
Sbjct: 432 aaaaatacattggtttctgtaatgcttg-gtccatactgattatta-tgattatgaggaa 375
Query: 123 atttccaatcaggataataatataaactacaaaaaacactgcaaatagaaacacttggag 182
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 374 atttccaatcaagataataatataaactacagaaaacactgcaaatagaaacccttggag 315
Query: 183 gataggcaggtaagaaaatcctaaaagcacaaattgtattactgtagaaacattgtctat 242
| | ||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 314 gttgggcaggtcagaaaatcctatgagcacaaactgtatcactgtggaaacattgtctat 255
Query: 243 ggactccagctcttcctgtttcatctgtggaaaatattaaatcagaaatacacataacag 302
|||||| |||||||| || ||||||||||||||||||||||||| ||||| | || ||
Sbjct: 254 ggactctagctcttcatgattcatctgtggaaaatattaaatcacaaatata--tacca- 198
Query: 303 ct---gcttttagtcta 316
|| ||||||||||||
Sbjct: 197 cttttgcttttagtcta 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_p19.g1 MSMg01no290_p19.g1 CHROMAT_FILE:
MSMg01no290_p19.g1 PHD_FILE: MSMg01no290_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:40 2005
(531 letters)
>mm_chr2_87466030_87466959
Length = 930
Score = 957 bits (495), Expect = 0.0
Identities = 522/534 (97%), Gaps = 7/534 (1%)
Strand = Plus / Plus
Query: 1 agtcattgcattaattgtaaaggatgaactaaaaacatgatcatactggggtgatgaaaa 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 agtcattgcattaattgtaaaggatgaactaaaa-catgatcatactggggtgatgaaaa 259
Query: 61 gtggtctggaattagatagaggcaggagatagtatgagcttatggacaatctaaaaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtggtctggaattagatagaggcaggagatagtatgagcttatggacaatctaaaaagac 319
Query: 121 acatgagggctggaaagatggttcagtggttaagagcactgactgctcttccagaggtcc 180
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 acatgagggctggaaaggtggttcagtggttgagagcactgactgctcttccagaggtcc 379
Query: 181 tgagttcaattcccagcaaccacatggtggctcacaaccatctctaatggaatctggtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgagttcaattcccagcaaccacatggtggctcacaaccatctctaatggaatctggtga 439
Query: 241 cctcttctgttgtgcctaatgacagctacagtgtactcatataaataaaatatataaatc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 cctcttctgttgtgcctaatgacagctacagtgtactcatataaataaaataaataaatc 499
Query: 301 ctttt----accaaataaaaagatacatgaatactaaaatgtcattttaaaagaatagat 356
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttttaaaa--aaataaaaagagacatgaatactaaaatgtcattttaaaagaatagat 557
Query: 357 attatagggctggagagatgttatttgcttatctttctggggaaaatgggaactggcttt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attatagggctggagagatgttatttgcttatctttctggggaaaatgggaactggcttt 617
Query: 417 ggatcctatcactcataacagcttanacaatctcttttaactctggttgtaagagatcca 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 618 ggatcctatcactcataacagcttaaacaatctcttttaactctggttgtaagagatcca 677
Query: 477 gtgccctcttctgacctcttttggcaataaacacttataaactcatgaagagaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgccctcttctgacctcttttggcaataaacacttataaactcatgaagagaa 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
