Query= MSMg01no291_b19.b1 MSMg01no291_b19.b1 CHROMAT_FILE:
MSMg01no291_b19.b1 PHD_FILE: MSMg01no291_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:49 2005
(611 letters)
>mm_chr2_79969316_79970327
Length = 1012
Score = 1083 bits (560), Expect = 0.0
Identities = 603/626 (96%), Gaps = 15/626 (2%)
Strand = Plus / Plus
Query: 1 gaagaaagtgcctgtttaaataccaaggcttttgtctcttaattgatctggaagcgacac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 187 gaagaaagtgcctgtttaaataccaaggcttttgtctcttaattgatctggaagcggcac 246
Query: 61 ttaaaaatacagcacacttcctgaataaatgcagccaatattaatgacaaacacggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttaaaaatacagcacacttcctgaataaatgcagccaatattaatgacaaacacggagaa 306
Query: 121 gagtcacacatagagccgtacaggagacagaccccagagctccacaggttgttattgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagtcacacatagagccgtacaggagacagaccccagagctccacaggttgttattgaga 366
Query: 181 gagtatgtccatcatgtgatgctggaatcgtgcttattcatcttctcctagcaactctac 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagtatgtccatcaagtgatgctggaatcgtgcttattcatcttctcctagcaactctac 426
Query: 241 acagtgggtaactgccaatttaaccagggaaaacacagcagctgcccccaccccgctctg 300
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 427 acagtgggtaactgccaatttaaccagggaaaacacagcagctgcgttcagcccgctctg 486
Query: 301 tgaatcctttgaggattaaaaaataaataaaatgaaatgggtgtgaatgcatgtgtgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgaatcctttgaggattaaaaaataaataaaatgaaatgggtgtgaatgcatgtgtgtga 546
Query: 361 gtgttgaaggcaaagggtgtgtgtgtgtgtgtgtgtgtgtgt--------------acgc 406
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 547 gtgttgaaggcaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgc 606
Query: 407 tgagaagagagattagagaaaatgatgctgtggtgtttgtgcatgttaggagaaaaatga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgagaagagagattagagaaaatgatgctgtggtgtttgtgcatgttaggagaaaaatga 666
Query: 467 gagaaagtggacataaaaggaatcagaactgattgtctgccaaactgccacacatggcga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gagaaagtggacataaaaggaatcagaactgattgtctgccaaactgccacacatggcga 726
Query: 527 gctttctttgtaacaggcacagatcctgagtggaccttcataatatctgttgctatctgc 586
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gctttctttgaaacaggcacagatcctgagtggaccttcataatatctgttgctatctgc 786
Query: 587 aagctgcttataaaa-tatcctccaa 611
|||||||||| |||| ||||||||||
Sbjct: 787 aagctgcttagaaaaatatcctccaa 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_b19.g1 MSMg01no291_b19.g1 CHROMAT_FILE:
MSMg01no291_b19.g1 PHD_FILE: MSMg01no291_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:49 2005
(616 letters)
>mm_chr2_80139617_80140632
Length = 1016
Score = 1062 bits (549), Expect = 0.0
Identities = 602/625 (96%), Gaps = 10/625 (1%)
Strand = Plus / Minus
Query: 1 gaaagaaagtaggagtgttgtccgccagcagaggagaagatggggttcgagggagtcggt 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 698 gaaagaaagtaggagtgttgtccaccagcagaggagaagatggggttcgagggagttggt 639
Query: 61 tgaggatgaagggcttttccagcctttcacactgagctactgttcctgcctgaacaggaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 638 tgaggatgaagggcttttccagcctttcacactgtgctactgttcctgcctgaacaggaa 579
Query: 121 cccgatggtgacttcctttggccttgttgtatctaatggccaacagctcccattttgctc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 578 cccgatggtgacttcctttggccttgttgtatctaatgaccaacagctcccattttgctc 519
Query: 181 caaacttctaccctgttcacttttcaaaaggttttaatttacatgttttcacatttggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caaacttctaccctgttcacttttcaaaaggttttaatttacatgttttcacatttggaa 459
Query: 241 gtaaaaattctctttgtgtaactatgaaaggtgatatttcttgtttctagccccgcatta 300
|||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 458 gtaaaaattctcttggtgtaactatgaaaggtgatatttcttgtttctagcagtggatta 399
Query: 301 tttaaagcaagtattcatgataataaaaccaataatattctatagttttaatataactta 360
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 398 tttaaagcaagtattcattatagtaaaaccaataatattctatagttttaatataactta 339
Query: 361 gttctactgtcatgaattttcattttaacccttatccctattaaagttgaatttatatcc 420
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 338 gttctactgtcatgaattttccttttaacccttagccctattaaagttgaatttatatcc 279
Query: 421 gaaagacctaatttattccttataaaaaatgttttaacaaatcctttttgtttattaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaaagacctaatttattccttataaaaaatgttttaacaaatcctttttgtttattaatt 219
Query: 481 agcagtatttacaaattgaatattttttttttttt---------aaatagtaaccgtttg 531
||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 218 agcagtatttacaaattgaat-tttttttttttttgtttaaaaaaaatagtaaccgtttg 160
Query: 532 cagaggctcttcttcaccacagtgctagttaggtctcttccttcattaatctcaaaggct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cagaggctcttcttcaccacagtgctagttaggtctcttccttcattaatctcaaaggct 100
Query: 592 taccccatgcctctgggacttccca 616
|||||||||||||||||||||||||
Sbjct: 99 taccccatgcctctgggacttccca 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
