TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAATTTATGCAAAAATGGTAAAAGTAAGCAAAACCCCAGGACTGA
TCTCTGTGTGCTTCCTGTCTTCCAATATAATGTGAGCAGTCATGTCACAC
TCTCAGTGTAACAGCTAGAGCTACTCTCACCAACATCCCTTCCCCACAAT
GATGGATAGCACTTTCAAATCATCCACCAAAACAAACCCTTCTTTCTATT
ATTTGATTTTGTTAGGTATTTCATCATACCAATAAGAAAATAAATCAATG
ATATGCATATTCCTACACATATATGCATAGATATATACATATATGTAACA
AATGTATGGATGAAAAGGAGCTACATTATTTGGGAGAGAAAGTGTAGCTG
TCTCTTGTGAGACTACGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCA
CAGTCAGCTAATGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAA
AGTACCCAAGGAGCTAAAGGGATCTGCAACTCTATAGGTGGAACAACATT
ATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCA
AAAGATGGTCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGC
AAACTTTATATGCCCCAGTACGGGGGAACGCCAGGGCCAAAAAGGGGGAG
TGGAGGGTTAAGGGGGAGTGGGGGTGNTTCCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAGTGCCCTTGCATTTGGAGCATAGA
TGTTCAGAATTGAGAGTTCTTCTTGGTAGAATTTCCTTTGATGAGTATGA
AGTATCTTCCTTAATTTTTTTTTGATGACTTTTGGTTTAAAGTCAATTTT
ATCTGATATTAGAATGGCTACTCCTGCTTGTTTCTTGGGACCATTTGCTT
GGAAAATTGTTTTCTAGTCCTTTACTCTGAGGTAGTGTTTGTCTTTGATA
CTAAGGTAAATTTCCTGTATGCAGCAAAATGCTGGTACTTGTTTCTGTAT
CCAGTCTGTTATTTTATGTCTTTCCCCCGGCGAATTGAGTCCATTGATGT
TAAGAGATATTCACCCACACCCGATTGATTCTCCCTGTTATTATTGATGT
TATTTTTATGTTTGTGTGGTTATCTTCTATTGGGTTTCTTGAAAGATTAC
TTTCTTGCTTTTTCAAGGTGTAGTTTCCCTCCTTGTGTTGGCATTTTCCT
TCTATTATCTTTTGTAGGACTGTATTTGTGGAAAGATATTGTGTAAATTT
TGTTTTGTCATGGAATATCTTGGTTTCTCCATCAATGGTAATTGAGAGTG
TTGCTGGGTATAGCATTCTGTGTTGGTATTTGTGTTCCCAGGATTTGAAT
GAGATTTCTCTAGGATCTTCTACATCTN

Query= MSMg01no291_f20.b1 MSMg01no291_f20.b1 CHROMAT_FILE:
MSMg01no291_f20.b1 PHD_FILE: MSMg01no291_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:08 2005
         (662 letters)



>mm_chr2_108878748_108879809
          Length = 1062

 Score = 1185 bits (613), Expect = 0.0
 Identities = 646/657 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaatttatgcaaaaatggtaaaagtaagcaaaaccccaggactgatctctgt 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaaatttaagtaaaaatggtaaaagtaagcaaaaccccaggactgatctctgt 263

                                                                       
Query: 64  gtgcttcctgtcttccaatataatgtgagcagtcatgtcacactctcagtgtaacagcta 123
           |||||||||| |||  |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 gtgcttcctgccttttaatacaatgtgagcagtcatgtcacactctcactgtaacagcta 323

                                                                       
Query: 124 gagctactctcaccaacatcccttccccacaatgatggatagcactttcaaatcatccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagctactctcaccaacatcccttccccacaatgatggatagcactttcaaatcatccac 383

                                                                       
Query: 184 caaaacaaacccttctttctattatttgattttgttaggtatttcatcataccaataaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaaacaaacccttctttctattatttgattttgttaggtatttcatcataccaataaga 443

                                                                       
Query: 244 aaataaatcaatgatatgcatattcctacacatatatgcatagatatatacatatatgta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaataaatcaatgatatgcatattcctacacatatatgcatagatatatacatatatgta 503

                                                                       
Query: 304 acaaatgtatggatgaaaaggagctacattatttgggagagaaagtgtagctgtctcttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaaatgtatggatgaaaaggagctacattatttgggagagaaagtgtagctgtctcttg 563

                                                                       
Query: 364 tgagactacgccggggcctagcaaacacagaagtggatgctcacagtcagctaatggatg 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgagactatgccggggcctagcaaacacagaagtggatgctcacagtcagctaatggatg 623

                                                                       
Query: 424 gatcacagggcccccaatggaggagctagagaaagtacccaaggagctaaagggatctgc 483
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatcacagggctcccaatggaggagctagagaaagtacccaaggagctaaagggatctgc 683

                                                                       
Query: 484 aactctataggtggaacaacattatgaactaaccagtaccccggagctcttgactctagc 543
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaccctataggtggaacaacattatgaactaaccagtaccccggagctcttgactctagc 743

                                                                       
Query: 544 tgcatatgtatcaaaagatggtctagtcggccatcactggaaagagaggcccattggaca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgcatatgtatcaaaagatggtctagtcggccatcactggaaagagaggcccattggaca 803

                                                                    
Query: 604 tgcaaactttatatgccccagtacgggggaacgccagggccaaaaagggggagtgga 660
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 tgcaaactttatatgccccagtacaggggaacgccagggccaaaaagggggagtgga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)