BAC Information

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BAC

Clone NameMSMg01-293F10
Chromosome2 (Build37)
Map Location 136,562,980 - 136,563,273
singlet/doubletsinglet
Overlap geneSnap25
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5
Downstream geneLOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293F10.T7 (MSMg01no293_f10.b1)MSMg01-293F10.TJ (MSMg01no293_f10.g1)
ACCAG421818AG421819
length831771
length of high quality
(start - end)
269 (46 - 314)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no293_f10.b1 PHD_FILE: MSMg01no293_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:43 2005CHROMAT_FILE: MSMg01no293_f10.g1 PHD_FILE: MSMg01no293_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCATACATCTCAGGCTATTGCCAAGACTATTGGTTGTTCTACCC
AACCTAATGATAAGGCCCAATTGCTGAAGTCAATTATTATGTCATCAAAT
ACAGAGAAGTTATATGAGAATCTTCACCCCAACTAATAGCATTCATGGTG
CTGGAAAGATCTCTGCACAGTACTGTAGAAGAAAATGATTATCAATACCA
CCCCACAGTAGTGACCTGCCTGCTAGACATATTGGTACAATAGTGGCACA
AATGTTATAGGTGTAACCATAACGTTTTAATTGGATTTAAAGTACATTCA
TGAAATGGAACCCCATTTTTTGACACCGCCACCGCGGCTTTGAACTGGGG
AACAAGATAAGTAATGCACCCCCCCGAAAGGAAAAAATAATCCTAANTGA
TTTTTGGGAGTAAAATTGCTTCCTAAATGAACTTAATCGTTGTTCCTGTA
GGGTCCAGTGCCCTCCTTTTTTTCCCCCCTCTTTATAAAACTTTCTTTTG
CGAAAAAAAATGGTAACAACTTTGTTCTCGGGAACTGGGGCAAATGTTGT
TAAAAAAGGGAAAAATGGGGGATATTCCCAGGGAAAAAGGGGGGAAGGTT
TTTTTCCCAAAGGCTTTCCCCCTTCCCACATTCCATTGGTTTTAAAGAAA
TAGCTTAATCAAAATACCTTTAGATGGGTGGGGGGCGGTTTTCTAAAAAA
AATTCTTTGGGTTTCCTTAATACTAATAGGGGGTGTGGGGCTCCTTTTAT
ACCCCCTCCACTTTCTTGTGGTAAAACATAA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCCACAGTGGCACAGGCCAGTTGG
TCTGTGCCGAGGCCTGCGATTAGCATTTTCATTACAGGATTCACAAGGCT
GCTGGTCCACAGACCACACTCTGAACAGAAGTATGAACACCTGGAAAGCT
TCAGGCTCAGACCATGACCAGAAAAGCTACATCCCATTTCATGAGAGCCA
GGAGGGAATTAATGTATAAGGATGGTTCTTTTATTCCCCCTAAGAAACCC
AGCAAAAGCAATAAGAGACTCTTAGTTGTTTAGAAACAGCACCAAAGCCC
TTGGAGAGGGTTCTTTTCTGTAGCCCTACCCCCGATGTATTGATGCTTTT
CTTTCTGCTCAGACCCCACCTGATGAAAACTGAAATTCCTCTAGTGAGAA
ACACAACTTGTGTCTCAGTCTGGGGAGGCTACTTGCAGAGTCATTCCACG
TTCGTCCATAGGCCTTCACAGTGAGGGTCCAGCATTAGGAAATGAATGAA
TGGGGAAATAAATGATTGCAGTCTCTCCATCTGCTGTATAATTATACCTA
GCTCTGCGTAAGTGTTGAACAACCTCTCCTGACCGCTGCATTCTCTCCAT
AATTAAGACCCGCTCTTCTGTTGTGAGGTGAAATTCTCCCTGTACTAAAG
GCCTTTCCTTTGAATAACACCTAACAAAAGGTACTCCCTATATGGGGGAA
CCCTGTACCTATTTTATTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_f10.g1 MSMg01no293_f10.g1 CHROMAT_FILE:
MSMg01no293_f10.g1 PHD_FILE: MSMg01no293_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:43 2005
         (294 letters)



>mm_chr2_136562676_136563369
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccacagtggcacaggccagttggtctgtgccgaggcctgcgattagcattttcatta 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttcccacagtggcccaggccagttggtctgtgccgaggcctgcgattagcattttcatta 539

                                                                       
Query: 61  caggattcacaaggctgctggtccacagaccacactctgaacagaagtatgaacacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 538 caggattcacaaggctgctggtccacagaccacactctgaacagaagtatgaacacccgg 479

                                                                       
Query: 121 aaagcttcaggctcagaccatgaccagaaaagctacatcccatttcatgagagccaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaagcttcaggctcagaccatgaccagaaaagctacatcccatttcatgagagccaggag 419

                                                                       
Query: 181 ggaattaatgtataaggatggttcttttattccccctaagaaacccagcaaaagcaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggaattaatgtataaggatggttcttttattccccctaagaaacccagcaaaagcaataa 359

                                                                 
Query: 241 gagactcttagttgtttagaaacagcaccaaagcccttggagagggttcttttc 294
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 358 gagactcttagttgtttagaaacagcaccaaagcctttggagagggttcttttc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)