BAC Information

Click to search

BAC

Clone NameMSMg01-294H08
Chromosome2 (Build37)
Map Location 149,768,989 - 149,769,302
singlet/doubletsinglet
Overlap geneOTTMUSG00000015750
Upstream geneGm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik
Downstream geneLOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294H08.T7 (MSMg01no294_h08.b1)MSMg01-294H08.TJ (MSMg01no294_h08.g1)
ACCAG422625AG422626
length743786
length of high quality
(start - end)
315 (45 - 359)---
definitionCHROMAT_FILE: MSMg01no294_h08.b1 PHD_FILE: MSMg01no294_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:08 2005CHROMAT_FILE: MSMg01no294_h08.g1 PHD_FILE: MSMg01no294_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTACAGCTTTAAATGATATGCCCATCGGAACAAGTCTAGATTGTC
TGTAGGACTCTCAGGTACCACTCTGTCTTCTTAGCTTTTGATCAGTCAAC
TTTCACCACATGAAGTGTGCCTCATCAAGTCAGTGTCCTACCCTGGTCAC
CTCTGTCTTATTTCCAAAAAGGAACTGGAGGCCAAGGGCTTACATATGCT
TGAAATAGTTTCACCTGATCAGCAGAAGTTTATGCCCTCCTAGGGAACAG
TTTATAGAACAGACTGGCTCTGTCAAAAGCTCTAGAGACCCCAGGAGTGT
GAGTGCTGGTTGCTCTATTTTTGTTCACAACGCATTCATTCAAGGCATTT
GGGTGGCTGGATTTGCTCTTTGCTGTAACAAGACATACTCAATTGTGCCT
GTGTCTTAGTCAATTAGTGTTACCTGTACTTATAAACTGTATAGTTCATC
TTCACAGAAGGAGAAACCATACACCATACTTAGATCTCTGCATCAGATAC
AAACAACTGCATGTAGTGAGCCCCCATAAGGTGCTAGACCCTGGGCTTAG
AGCTTTCCTGTATTATTGAATTAGGGACTTTTCCCTGTCTGTCTTTTGAA
TGAAAAGAAACAGGGTTTGCCAGATTTCTCACACAATTCAGTCTCACTAG
ATAGTGTAACATGCCTTTATATTTCACTAACACCTTCCGAGAC
GATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGAATAGGCTGGGTACTATCGAAGT
GTGGATTTGTATCTAAGATTTTTTGCCCCGAAAGGATAATTGTATTTTGA
GTGTTGGATTATTCTGAGATGATATTCTGATTCTTCACAACCCACCAATG
TGTAACATAGGCCTTTTACTGTACAGTTACTGACGGGGAAAGTGTGTCCT
CCAGGTCTTGAAAAAATAGAGGTTTTCTATGTTGGAAATTTCTCTTTGTT
TATTTGCACACAGAAAGAGTTCTGTTTTCGGAGTGTCCTTGATTCATGGT
AGTGATGTCCATTGTTTTTTTTTTCTTGCCACCCCATAGATTGATGTATG
CCATATAGGGACGGAGATGTAACTCTTAATATAAAAATGTGCCGAAGGTG
ATGTTATCCCTATTCTTTGGTGCCTGAATGAGTCCTCCAACATGTCGGCA
ACCAGTTATGCTCTCTGCTGTCAGAGCTGCCCTCTTGCTCGCTTTTATCC
TATTTTCTAACGATGCCTTGCGTAGATTAATAGTCATCACTGTTATTTGA
AGAGTTACAGAAATCTTGATTGGTCCATGTTTTCGGGTGTGAAAGAAACT
TAATGTCCCCGTCCTGATTTTTTCTTTGTTACATCCTACCTGGCCTTCTT
GGTAGTTCCATCTTAAGTTGGGGCCTTTTGCTTTTAAGTAATCTCACGGT
AGGTCAGCTCTCTTTTATCTCTATTTTTCGACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_h08.b1 MSMg01no294_h08.b1 CHROMAT_FILE:
MSMg01no294_h08.b1 PHD_FILE: MSMg01no294_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:08 2005
         (315 letters)



>mm_chr2_149768786_149769502
          Length = 717

 Score =  518 bits (268), Expect = e-151
 Identities = 302/316 (95%), Gaps = 6/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctacagctttaaatgatatgcccatcggaacaagtctagattgtctgtagga 63
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 517 ggaattctctacagctttaaatgatatgcccattggaacaagtctagattgtctgtaggg 458

                                                                       
Query: 64  ctctcaggtaccactctgtcttcttagcttttgatcagtcaactttcaccacatgaagtg 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 457 ctctcaggtaccactctgtcttcttagcttttgatccgtcaactttcaccacatgaagtg 398

                                                                       
Query: 124 tgcctcatcaagtcagtgtcctaccctggtcacctctgtcttatttccaaaaaggaactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 397 tgcctcatcaagtcagtgtcctaccctggtcacctctgtcttatttccaaacaggaactg 338

                                                                       
Query: 184 gaggccaagggcttacatatgcttgaaatagtttcacctgatcagcagaagtttatgccc 243
           ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 337 gaggccaagggcttagatatgcttgggatagtttcacctgatcagcagaagtttatgccc 278

                                                                       
Query: 244 tcctagggaacagtttatagaacagactggctctgtca----aaagctctagagacccca 299
           ||||||||||||||||| ||||||||||||||||||      ||||||||||||||||||
Sbjct: 277 tcctagggaacagtttagagaacagactggctctgt--gttgaaagctctagagacccca 220

                           
Query: 300 ggagtgtgagtgctgg 315
           ||||||||||||||||
Sbjct: 219 ggagtgtgagtgctgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 717
Length adjustment: 9
Effective length of query: 306
Effective length of database: 708
Effective search space:   216648
Effective search space used:   216648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)