BAC Information

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BAC

Clone NameMSMg01-294I23
Chromosome2 (Build37)
Map Location 40,709,570 - 40,709,774
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I23.T7 (MSMg01no294_i23.b1)MSMg01-294I23.TJ (MSMg01no294_i23.g1)
ACCAG422700AG422701
length725722
length of high quality
(start - end)
283 (382 - 664)281 (80 - 360)
definitionCHROMAT_FILE: MSMg01no294_i23.b1 PHD_FILE: MSMg01no294_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:16 2005CHROMAT_FILE: MSMg01no294_i23.g1 PHD_FILE: MSMg01no294_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATACACATGGACATGACGATATTAAGACAGAATTATTTGACAATTACAG
TAAAAAGTTTGCGTGTATAACTGGTGAAATTTGTTAGGGAAATTTACCCT
TACTTGGACCTGAAACTTATCTTTATAATTAGCTTACAAATTTCTTGTGA
AATGCAGCCATTTATTTCAGATTTTAGGACACAGTAAGACTTAATTGCAG
ATTGTGAGTGTATAAGAGGTGTAGAATACTGTCCTTTCAGGCCTTTATAG
TAGTGTGTGTTGCAAATTGAGTCTCTATTATATTATGGAGTCTCATATAT
CTATATATATCATATACTCACACACACACACACACACACACACACACACA
CACACACACACACACACACATATATATATATATATATATATATATATATA
TATATATATATATATCACATGTCTAGTCTTATATGATAGAAGTATAATTG
AGAATAAGGACTAGCATCTAGTAGGATGTAGACTAGCATCTTCTCAAAGA
AGTGGTATGTGGAATCTAAGGTAGTATACCCTAGAAACAGGTTGTTTTGA
TTCGAATTTCAAGTCTTCCCATGACTGTGTGAACTTAGATTTAATTAATC
TTTAAGAGCCTATAATTTTTCAAGTCTTGAGAAAACAATACTAACCTCAT
TTTTTATACCATTATAAAAAAAGAT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTGTACCTGACACATTC
TTTGCCAAAAAATGACTCCCCCGACTCAAATAGTATGTAAACACAGAGTT
TTATTTTGCATAAGTCAAGCATGCTGGGGTCTCCCATTACCAAGATAGAG
AGAGAGCTTCAAGTGACCTTTTAGGCCCAATCTAAAACTATTGGGAAATC
CCAGGTAGGTTGGCTTACTCTATCTCTAAGGGCATTCCATTACCAGGTTA
TGGAGGCTGTCCAGAAACTGCTGCTGACCCATTGTCCTTGCCTCAGGCAG
GGGGCTGACAGTTTTTGTGGCCTCGCACTGCCTAGACTTGCCTGGTTCTT
GGAAACTGAGATATTTGAAGCCTATCATGAAGTCAACCTAACCTTCTCAG
AATATTTATTGAACCAAGCAATTCTAAACAAGGACACATAATCTAGTTAC
TCCAAGTCTAAAGAAGAAGCTTATAGCTCAATGAACAAGGGGGTTATAAA
AATATAACCACAAGTTTGGTACATGCTGTGGATGTAGCTGTAGTGAGTAT
TAGAAAGCATGACAGAATATGAACTTTTAATATGTCTAGAGCACAGATGT
GTCACCATGGTACTTCTGTCTGATCAGAAAGGGGAATACAATGCCTTGAT
TATTAAAAAGAAAAATGCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i23.b1 MSMg01no294_i23.b1 CHROMAT_FILE:
MSMg01no294_i23.b1 PHD_FILE: MSMg01no294_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:16 2005
         (283 letters)



>mm_chr2_40709294_40709976
          Length = 683

 Score =  397 bits (205), Expect = e-115
 Identities = 205/205 (100%)
 Strand = Plus / Plus

                                                                       
Query: 77  atatatatcacatgtctagtcttatatgatagaagtataattgagaataaggactagcat 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atatatatcacatgtctagtcttatatgatagaagtataattgagaataaggactagcat 336

                                                                       
Query: 137 ctagtaggatgtagactagcatcttctcaaagaagtggtatgtggaatctaaggtagtat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctagtaggatgtagactagcatcttctcaaagaagtggtatgtggaatctaaggtagtat 396

                                                                       
Query: 197 accctagaaacaggttgttttgattcgaatttcaagtcttcccatgactgtgtgaactta 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 accctagaaacaggttgttttgattcgaatttcaagtcttcccatgactgtgtgaactta 456

                                    
Query: 257 gatttaattaatctttaagagccta 281
           |||||||||||||||||||||||||
Sbjct: 457 gatttaattaatctttaagagccta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)