BAC Information

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BAC

Clone NameMSMg01-295E24
Chromosome2 (Build37)
Map Location 172,453,024 - 172,453,259
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c
Downstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295E24.T7 (MSMg01no295_e24.b1)MSMg01-295E24.TJ (MSMg01no295_e24.g1)
ACCAG423241AG423242
length766768
length of high quality
(start - end)
236 (125 - 360)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no295_e24.b1 PHD_FILE: MSMg01no295_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:12 2005CHROMAT_FILE: MSMg01no295_e24.g1 PHD_FILE: MSMg01no295_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCTTTTGCCAAGGGGAAAACAAAAACCCGTCTGTCCTCCCAAAGAACA
GTTGGGGCTCGCTGATTCCAGCCCGCGGGTGTGGGCCGGGATGGTGGCAG
AAACCTGGCTCAGAGGAGAGCTGGGTGGGCCGAGGGACACAGGTGGAAAG
CAAAGTCCTAGGACCGTGCCTAGAGATGAAGCCAAGCCCGACCTGACACC
CCGGCTCCACCTCTGAGGACCCCACACCTTCACATTAGCCCAATCCCATC
CCTGGACAGCCTCCTCATCTAATTCTACGCCTTCTCTGCATGCTATGGTG
ATTGGCTGATGNAATCAGTACTTAGGCAANNACCAAGTTAGGTATTGTGT
GAGCTCAGCCATTGCCCAGGAAAAAAGTCATTCAACATTGCGTGGGGGCG
GACCTGGAGAATGTCCTCTTTCTCCGTTATCCAATACCTCATTTATTCAG
CAAGAATGAGGGGGTAAGGGCTGGAGAGATAACTCAGAGGTTAAGAGCAC
TGACTGCTCTTGCAGAGGACCTGGCTTCAGTTCCCAGCATTATATCAAAT
GGCTTACAACAGCCTGTAACTCTATTCTGCAACTCCAGTTTTAAGGGATC
CAATGCCCTCTTCTGGCCTCTGCCGGTATTACACTCTCACACCCACTCAT
TCTTATTCTCTTCCTCTCTGCAGGCTTTACTCACACCCCCCCTCTCTCTT
CTTTTTACCTTTTCTT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAACTC
AGAAATCTGCCTGCCTCTGCCCCCCAAGTGCTGGGATTAAAGGCGTGAGC
CACCAGGTCATTCAACATAGAGGCAAACACCAGTGCCTGCTGGGTGATCA
CCAGTTCCATTGTTTTAGAAGCAGCATCTTGTTGGGTTACCTAGGCTGGC
TTCAGACTATCCTCCTGCCTCAGACTCTCAAACACTGTGATTATGGTCAC
TACTGCTACTGGATGTGGGTCATTATTCTGATTTTAAAATTAAACACCAC
AGTATGCGTANAAGTTACCTTCNTGCCGNGTGCAAAATACCATGACCAAA
GCAACTTATGGACAACCTTATTAAGAAAAAAAACATCTGGAGGGAGTGTG
CATGGCTTAGGCCTCTGGAGGGAGTGTCCATGACTTAGGCCTCTGGAGGG
AGTGTCCATGACTTATGCCTCTGGAGGGAGTGTCCATGGCTTAGGCCTCT
GGAGGGGGTGTCCATGGCTTAGGCCTCTGGAGGGAGCGTCCATGACTTAT
GCCTCTGGAGGGAGTGTCCCATGACTTACGTCTCTGGAGGGAGTGTCCTT
GACTTACGTCTCTTGTGGGGAGCGTCCATGTCTTATGCATCTGGAACGAG
TGTCCACGTTTTACGTATTTGTATTTAGTGTCCCCGTTTTTCCTCTCCCC
GTACTTATTCGCCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_e24.b1 MSMg01no295_e24.b1 CHROMAT_FILE:
MSMg01no295_e24.b1 PHD_FILE: MSMg01no295_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:12 2005
         (236 letters)



>mm_chr2_172452824_172453459
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcgggtgtgggccgggatggtggcagaaacctggctcagaggagagctgggtgggccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcgggtgtgggccgggatggtggcagaaacctggctcagaggagagctgggtgggccgag 377

                                                                       
Query: 61  ggacacaggtggaaagcaaagtcctaggaccgtgcctagagatgaagccaagcccgacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggacacaggtggaaagcaaagtcctaggaccgtgcctagagatgaagccaagcccgacct 317

                                                                       
Query: 121 gacaccccggctccacctctgaggaccccacaccttcacattagcccaatcccatccctg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 316 gacaccccggctccacctctgaggaccccacagcttcacattagcccaatcccatccctg 257

                                                                   
Query: 181 gacagcctcctcatctaattctacgccttctctgcatgctatggtgattggctgat 236
           ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||
Sbjct: 256 gacagcctcctcatctaacccaacgccttctctgcatgctatggtgattggctgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)