BAC Information

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BAC

Clone NameMSMg01-295G14
Chromosome2 (Build37)
Map Location 37,061,102 - 37,061,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365
Downstream geneOlfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295G14.T7 (MSMg01no295_g14.b1)MSMg01-295G14.TJ (MSMg01no295_g14.g1)
ACCAG423311AG423312
length749765
length of high quality
(start - end)
327 (45 - 371)134 (202 - 335)
definitionCHROMAT_FILE: MSMg01no295_g14.b1 PHD_FILE: MSMg01no295_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:20 2005CHROMAT_FILE: MSMg01no295_g14.g1 PHD_FILE: MSMg01no295_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGATAACAACTGGGATAAACAAGGGCTCCATCTAAGATTCACTA
ATCTTAGAAGCCAGGGTCAAGGGCTACATGACCTAGCCATAGTTCCTATT
TTAGTCTATTATATAGTCCACCTTCCCCTTAGGCCATTGTAAATACGTGT
GTATGGGTGTAACTTCACTATAGTTCTAAGTATCTATTCTGATTTCTCCT
TTGATCTGAAACTTCCTTTTTCCTAGTGATGGTAAATTCCTGTGTAAGGG
AGTGACCTAGGTTTTATAGTGTAGTACTAGAGGCTATTCTGATTAGCAAC
ATTCCTATTGTTTTTCTAGCCCCCGATCTTCCTCAAGGACGTTCTAGGAC
TGTTGGAACATTGGTGGAAGGCTTTAACTATGTCAGAATTCAATCTTAAA
AGGCACTTATAATAGGAAAATACTAAAAGAGAGCACGTGGATCCATACAC
AAGACTGACACAGGAATGGAAAATTAATGTATGGGTTAAAGGGAATGCCA
GACTCCAGGAGGAGAGCTTCCGTGAAGCTCTTTGCCTCATGAGTGACTTT
TAAGCCTCTCGGCTTCAGCTGACTCGACCAGAGCACATGGCACTCTTTCT
TTCTTTTCTTCTCTTCTCTTTTTTTTTTTTTTAAAGCTGAGTTGTATGTG
CGTTCCACCTCCCATGAGGATGTTGCACAGATATCTAGTAATTCTTTAT
CCATTGATXXXXXXXXXXXXXXXXXXXXXXXXTTACAAAAAGGGAGGNNG
AANAGAGAATTATCCGAAAAANTCCAGGNAAAGAGGAACAGAAATGAAAA
CNACGGGAAGNNNCATTTCATCTCTTACTTGCGGGGTATTTCCTGATTAC
TGGAAGATGACAAAGAGAGNAATGGNAGGAANCTTGATGTTANAATTTAG
CCTTTCCTGTGTTCCATCCCATCCCATATATTTTTTACTACATCTTTAAT
GTTTAGTGTCTTATGTGATTCTATTAAAAAAGCTTCTGATCCAGAAGAAC
TGGCATTTGTGAGATTTTTTTTTTTTTGAGAAACACGGAGACAGANAAAG
GGANGGTTGGNGTGGGTCCCAGAACCGAAAACCCCCAGGGATAGAAGAGA
NGANGGANNGNNNGGNNGNNNAAAAAANNNAAAANNNNAAAAGGNNNNNN
GGGNNNNGGGGGNNNNNNNNNNNNNNGNNNNGNNNGNNNNNGNNNNNGNN
GGNNNNNNGGGNNGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GNGGGGGGGGGGGGGGGGNGGGGGGGGGGNGGGGGGGGGGNGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGNGGGGGGGGGGGGGGG
GGGNGNNNGGGGGGGTTTTTTTTTTTTTTTGGGGGGGGGGGTGGTGGGGG
GGGGGGTTTTTTTTTTTTGTTTTTGTGTTTGGGGTTTTTTTGGTTGGTGT
GGTTTTTGGGGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_g14.g1 MSMg01no295_g14.g1 CHROMAT_FILE:
MSMg01no295_g14.g1 PHD_FILE: MSMg01no295_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:20 2005
         (134 letters)



>mm_chr2_37060902_37061435
          Length = 534

 Score =  180 bits (93), Expect = 3e-50
 Identities = 111/117 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcctgtgttccatcccatcccatatattttttactacatctttaatgtttagtgtct 60
           |||||||||||||||||||||||||||||||| ||||||||||||||| |   |||||||
Sbjct: 317 ctttcctgtgttccatcccatcccatatatttcttactacatctttaaggccaagtgtct 258

                                                                    
Query: 61  tatgtgattctattaaaaaagcttctgatccagaagaactggcatttgtgagatttt 117
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tatgtgatactattaaaaaagcttctgatccagaagaactggcatttgtgagatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)