BAC Information

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BAC

Clone NameMSMg01-295I05
Chromosome2 (Build37)
Map Location 124,365,560 - 124,366,132
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I05.T7 (MSMg01no295_i05.b1)MSMg01-295I05.TJ (MSMg01no295_i05.g1)
ACCAG423386AG423387
length753751
length of high quality
(start - end)
317 (50 - 366)674 (78 - 751)
definitionCHROMAT_FILE: MSMg01no295_i05.b1 PHD_FILE: MSMg01no295_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:28 2005CHROMAT_FILE: MSMg01no295_i05.g1 PHD_FILE: MSMg01no295_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAGAACAATTTAAAAGTGCAGAACTGTGAGTCACGTGGCA
TGAGTAAAGCTTTGTCAGAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTCT
GTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTTCAT
TGTGCTTTGTCTTTGGCTCTTTTTCATGTTCGTTTATTTGTTTTGTACTA
TTCCAGTTTGATTTTATTTTAAAGATTTATTTATTTCATATATATGAGTA
CACTCTAGCTGTCTTCAAACACACCATATGAGGGCATCAGATCTCATCAC
AGATGGTTGTGTGTTATTTTGTACCTCCTCCCAATTGAACTCAGGACTTC
TGGAAGAGCAGTCAGTGCCCCTAATTGCTAAGACATCTCTCCAGCCCTGT
CTCTTTTATCTTCTTTTATTGCATTATTATTCCATAGGTGCCTGCTTATT
TTCTATCAAGAAACATAAAGGGTAGGAACTCAGATCAGAAGGAAAGAGAG
GATCGGAGAGGAATCAAAAAAGCAGAAATTATAATCAGAATAGAGTATAT
GAAAATTTTCTATTTTTAATAAAAGAAAAATAGAAAAAATAATAACATTA
CATAATTGTGATAAAAGGAGAGAAGAATGAATGTCACATGATGTCTAGTG
CAATGAATCCCAAGGCTAGTTGATTGTTAAGCTTTCTTCATTAATTCATT
GAN
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAATTTCACATCCCATGTTGCA
CAGGAAAAGCTACAGCATAATGGAGCTTTAAATTGTGAGCTTCAAGAATA
CATGAATAATTTGCAGTTTGAGTTTAACTTATGCCCTTCCCATAAGTGTC
CCAAATATTAATAATGAACATATAAGTTGCCTTCTTTAAAGGAGTTGAAT
ATAAATGCAATATTTAAAAGACAGGCATGCTCACACTAAAACAGGATATT
GATCTGTGGAATCGATTTTCTCGGACTTTTTCCAGTCTTATTTAAGACGT
TTGTTAAGTATTTATGGTAACAACATGCATTCACATTTTACTTTCTCTCA
GGTTAATGACTCTGTTAACAAAGAATAAGGGAAATGCAAAGAGGTGAGAA
TTCTTAACTCTGCCTCTCACATCAGAATAACCCGACTGGTTACAATAGAA
GGTAGAACACCCAGACTCTCACTTTGGCTAACAAATCAGAAACTTTGTGG
CCAAGGTCAAGGCTTCTGTCACAGTCTTTATCTAAGCTCAGGTTATTGAT
TGTGCAGCAAGGTTCAAATCCACTGGGCTGCATGTTGAGGAAGCCAGTCA
TGACACAGCATTCAGTTTTCTATAAGAAATCAAGAAAACTATGGTTTCTT
TAGCATGATAAAGATGATCATGCATGTGCAAAACTGGTTGGTGAGTCATG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i05.g1 MSMg01no295_i05.g1 CHROMAT_FILE:
MSMg01no295_i05.g1 PHD_FILE: MSMg01no295_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:28 2005
         (674 letters)



>mm_chr2_124365560_124366633
          Length = 1074

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%), Gaps = 2/574 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaatttcacatcccatgttgcacaggaaaagctacagcataatggagctttaaattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcaatttcacatcccatgttgcacaggaaaagctacagcataatggagctttaaattgtg 514

                                                                       
Query: 61  agcttcaagaatacatgaataatttgcagtttgagtttaacttatgcccttcccataagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agcttcaagaatacatgaataatttgcagtttgagtttaacttatgcccttcccataagt 454

                                                                       
Query: 121 gtcccaaatattaataatgaacatataagttgccttctttaaaggagttgaatataaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtcccaaatattaataatgaacatataagttgccttctttaaaggagttgaatataaatg 394

                                                                       
Query: 181 caatatttaaaagacaggcatgctcacactaaaacaggatattgatctgtggaatcgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caatatttaaaagacaggcatgctcacactaaaacaggatattgatctgtggaatcgatt 334

                                                                       
Query: 241 ttctcggactttttccagtcttatttaagacgtttgttaagtatttatggtaacaacatg 300
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 333 ttctcggacttttttcagtcttatttaagacgtttgttaagtatttatggcaacaacatg 274

                                                                       
Query: 301 cattcacattttactttctctcaggttaatgactctgtt-aacaaagaataagggaaatg 359
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 273 cattcacattttactttctctcaggttaatgactctgttcaa-aaagaataagggaaatg 215

                                                                       
Query: 360 caaagaggtgagaattcttaactctgcctctcacatcagaataacccgactggttacaat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 caaagaggtgagaattcttaactctgcctctcacatcagaataacccgactggttacaat 155

                                                                       
Query: 420 agaaggtagaacacccagactctcactttggctaacaaatcagaaactttgtggccaagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agaaggtagaacacccagactctcactttggctaacaaatcagaaactttgtggccaagg 95

                                                                       
Query: 480 tcaaggcttctgtcacagtctttatctaagctcaggttattgattgtgcagcaaggttca 539
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 94  tcaaggcttctgtcacagtctttatctaagctcatgttattgattgtgcagcaaggttca 35

                                             
Query: 540 aatccactgggctgcatgttgaggaagccagtca 573
           | ||||||||||||||||||||||||||||||||
Sbjct: 34  actccactgggctgcatgttgaggaagccagtca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)