BAC Information

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BAC

Clone NameMSMg01-295M03
Chromosome2 (Build37)
Map Location 110,455,780 - 110,456,064
singlet/doubletsinglet
Overlap geneSlc5a12
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M03.T7 (MSMg01no295_m03.b1)MSMg01-295M03.TJ (MSMg01no295_m03.g1)
ACCAG423562AG423563
length747748
length of high quality
(start - end)
677 (52 - 728)287 (81 - 367)
definitionCHROMAT_FILE: MSMg01no295_m03.b1 PHD_FILE: MSMg01no295_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:46 2005CHROMAT_FILE: MSMg01no295_m03.g1 PHD_FILE: MSMg01no295_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAACAGAGAAATCCTGAATGGCTGAGAAACACCTAAAG
AAATGTTCAAAGTTCTCAGTGATCAGAGATAAGCAAATCAAAATGACCCT
AATATTCTGCCTTACACTAATCAGAAAGGGTAAGATCAAAACCTCAGGTA
ACAGCACATATTGGTGAGGATGTGGAGAAAGAGGAACATTCCTCCATGGC
TGGTGGGATTGCAAACTGGTACAACGACTCTGGAAATCAATCTGGAGGTT
CCTCAGAAAACTGAAAATAGATCTACTTGGGAATAAACCCAAAAGATGTC
CCACCATGCCACAGGGGTATATGTTCTACGATGTTCCTAGCAGCCTTATT
TGTGATAGCCAGAAGCTGGAAACAACCCAGATATCCCACAACAGGAAAAT
GTATTCAGAAAATGTGGTTCATTTACACAATGGAATACTATTCAGCTATT
AAGAATGAGGACATCCTGAGTTTTGCAGGAAAATGGATGGAACTAGAAAA
TATCATCCTGGGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGT
ACTCATTAATAAGTAGATAGCCAAAACAGTACCAAACACCCAAGATACAG
TCCATAGAACTCAAAAAGGTCAACAAGCTGAAGGGCCCAAGTGAGGATGC
CTCAGTCCCACTTGGGAGGGAAAAGAAAGCAATCACAAGGGGGTGAG
NATACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACAAAACACACAGGTCC
AGCTGGACAAATTTAGAGTTTTAAAGTAACTAGTGGCAACACGTTTTGGA
AACTACGAGACAGAGTGAATCAGAGACAGAGAAACAGAGTCATAGAGAGA
CAGAAGACAAAAACAGAGACACAGACAGCAAACAACTAAGAAGGAATAAA
TATCAGTTTCTACATATATGTGGAGTGAGGAGTGTTAAAAGCAGCATGGC
AATTAGACAGGCAATCACACCAGAGTTTCAGAAAGTTTAATCAAATAGTT
ATGTTTTCCATAATTATTATTTTTAGAGCACTTACCACCGTGACTATACC
AAACCTGCCTCCCTTGTAGAGGAGGCGGCAGGAAGAAAACAATGTCCATA
TTCCTCTCCAGGGGTCCTAAATTAACGGAGAAATTAACTGAGACTAGGCT
TGTGTTCTTTTCTTTCTGAGTTTCAAAAGTTCCACAAATGATTCTAATGT
AGAGTTCTTGCTGAAAGCACATGGGCAGAAAGAAGGAGAAAAATGAGAGC
TTGCTGTAGCGTTCCATCACTGAATCCCCTAGGACCATCATGAACATGGC
ACAGGCAATTACGGAAAAATTAATTGAAGTGGCATATAAAGGTGTTTTGC
ACGTGAGTAAGTGCCAGTACCATGAAAGGAGGTAATATTTTTAACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m03.g1 MSMg01no295_m03.g1 CHROMAT_FILE:
MSMg01no295_m03.g1 PHD_FILE: MSMg01no295_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:46 2005
         (287 letters)



>mm_chr2_110455432_110456114
          Length = 683

 Score =  478 bits (247), Expect = e-139
 Identities = 277/289 (95%), Gaps = 6/289 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacaaaacacacag-g-tccagctggacaaatttagagttttaaagtaactagtggca 58
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agtacaaaacacacagagatccagctggacaaatttagagttttaaagtaactagtggca 574

                                                                       
Query: 59  acacgttttggaaactacgagacagagtgaatcagagacagagaaacagagtcatagaga 118
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 acacgttttggaagctacgagacagagtgaatgagagacagagaaacagagtcatagaga 514

                                                                       
Query: 119 gacagaagacaaaaacagagacacagacagcaaacaactaagaaggaataaatatcagtt 178
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 513 gacagaagacaaaaacagagacacagacagcaaacaactaataaggaataaatatcagtt 454

                                                                       
Query: 179 tctacatatatgtggagtgaggagtgttaaaagcagcatggcaattagacaggcaatcac 238
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 453 tctacatatatgtggagtgaggagtgttaaaagcagcatggcaattaga----caatcac 398

                                                            
Query: 239 accagagtttcagaaagtttaatcaaatagttatgttttccataattat 287
           ||||||||||||||| |||||||||||||||||||||  ||||||||||
Sbjct: 397 accagagtttcagaacgtttaatcaaatagttatgttcaccataattat 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 683
Length adjustment: 9
Effective length of query: 278
Effective length of database: 674
Effective search space:   187372
Effective search space used:   187372
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)