BAC Information

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BAC

Clone NameMSMg01-295N08
Chromosome2 (Build37)
Map Location 159,479,506 - 159,643,380
singlet/doubletdoublet
Overlap geneLOC100043689
Upstream genePpp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295N08.T7 (MSMg01no295_n08.b1)MSMg01-295N08.TJ (MSMg01no295_n08.g1)
ACCAG423615AG423616
length758753
length of high quality
(start - end)
185 (46 - 230)114 (78 - 191)
definitionCHROMAT_FILE: MSMg01no295_n08.b1 PHD_FILE: MSMg01no295_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:52 2005CHROMAT_FILE: MSMg01no295_n08.g1 PHD_FILE: MSMg01no295_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,479,506 - 159,479,684)(159,643,267 - 159,643,380)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGCAGTTGTGGATGCCTGCTCTGGTTCTGCTCATTAACAGTCA
CACTTGGGTGGAATAGAGTCTCTTGCGTTTAGGAAGAGAGAAAAATGCCA
CCTTCAGTTGTGTATCCACAGGTGACCCTCTAGGATCCAAAGGATAGTTC
CACTCCAATGTTCATAGATTGGCTATGGCTCAACTGAGTGGGTCACAGAA
CAAAACTAAGAGTCTTGAATCTTAGAAATGTACCTGTACTCATGAGGGGA
GGTTGATAGGCCTGGGGATAATATATGATGGAGAAAAAGGCTAATATGAA
TACCCTACATTTAAAGTGGTTTCCCCGCACCTCCCCCAATTAACCCCTCC
ACAATAAAAACGATCTTTCCCCCCCAAAACNCACTAAATGAGAGTGGGGA
CGGGTGCGTATGCCTCTAGAATGTTCTCGCTTACTATGACGTTCATTGTT
AGTTATTTCTCTACTCTATGACCTCCTGTAACACCCTGATATATTTTTTT
ATTGCCTCCGTTCCTATTCCTGAAGATTCATTTTTTCCTATTGTGATTCA
TAATCTTTTATTCCGCTTTTTGCCGTACTCCGTTCTTGCTTTTCAAGCTT
TTCAATGTGTTCATGCTATTCCATTTCTTGTACATCCCTCGGTTTCCATT
GCCCTACTGATCCTTTTTCTCATTCGTACTTCCTATGACCCGGNTATCTT
TTGCTTTT
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGATGCTGTCCTAGACATAG
TGAACATTTGACACTTAACAGTATTTCTCAATCTTGATTTCATAGCATAT
GCCTTCCACCTAGGGTATCGCTGTCATCTTGACCTTTATGTGGCATCAGC
TTTTTTTCCTAGTACAATTCTTCTAGCCACTATCTTTGGATTTAATGTAT
TAGAATGAATGAATTGCTTATGTCCCCAAATAAATTTACTATCATGTTAC
ATGACCACTTTTGCCTCAAGATTTTTAAATAATAAGTGATCACCAAAGTC
GAGACCGACTTTTTCGTACTCTCTCCGCCACCCCCACACTCTTAAGCTAC
TCACTAATCTTGACTACCCCCCAACAAAAAAAAAATTACTAAGGCCGGGC
GTGATGGTCATATAAAGTATCCCTTCCATCTTAGCCTTTACTAGTTCACA
GAACTGATGATATTTTGGTTCCGTCTGTTACCCTACCAGGATCCCACTTG
CATTTCACCGCACTGGCCAACCTACTTTCCTATGCAGACCATTGCTTTTC
TCACTTTTCCTTTATTTTTCTGCCTTTGAACCCCTTACCTATTGCCTTAA
TACCCTATACCGCCTCATTTCCTCTCCCGTTTTATCCCCCCATTGTTCCC
CTTTTTTTTCTCCCTATATCCCTGTTTTCCTTTGCCTTTTGTTTCTCTCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_n08.b1 MSMg01no295_n08.b1 CHROMAT_FILE:
MSMg01no295_n08.b1 PHD_FILE: MSMg01no295_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:52 2005
         (185 letters)



>mm_chr2_159479302_159479886
          Length = 585

 Score =  323 bits (167), Expect = 4e-93
 Identities = 176/179 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagcagttgtggatgcctgctctggttctgctcattaacagtcacacttgggt 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattcacagcagttgtggatgcctgctctgggtctgctcattaacagtcacacttgggt 264

                                                                       
Query: 65  ggaatagagtctcttgcgtttaggaagagagaaaaatgccaccttcagttgtgtatccac 124
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaatagaggctcttgggtttaggaagagagaaaaatgccaccttcagttgtgtatccac 324

                                                                      
Query: 125 aggtgaccctctaggatccaaaggatagttccactccaatgttcatagattggctatgg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggtgaccctctaggatccaaaggatagttccactccaatgttcatagattggctatgg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no295_n08.g1 MSMg01no295_n08.g1 CHROMAT_FILE:
MSMg01no295_n08.g1 PHD_FILE: MSMg01no295_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:52 2005
         (114 letters)



>mm_chr2_159643067_159643580
          Length = 514

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgatgctgtcctagacatagtgaacatttgacacttaacagtatttctcaatcttga 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttctgacgctgtcctagacatagtgaacatttgacacttaacagtatttctcaatcttga 255

                                                                 
Query: 61  tttcatagcatatgccttccacctagggtatcgctgtcatcttgacctttatgt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttcatagcatatgccttccacctagggtatcgctgtcatcttgacctttatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)